Hb_008289_040

Information

Type -
Description -
Location Contig8289: 59966-77785
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16030g
description POPTRDRAFT_823135; transducin family protein
nr
ID XP_012092955.1
description PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
swissprot
ID Q8W117
description Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana GN=SMU1 PE=1 SV=1
trembl
ID A0A067JJC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05849 PE=4 SV=1
Gene Ontology
ID GO:0005515
description suppressor of mec-8 and unc-52 protein homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59754: 60072-77179 , PASA_asmbl_59755: 60072-77179 , PASA_asmbl_59756: 61614-61879 , PASA_asmbl_59757: 74795-75031 , PASA_asmbl_59758: 77253-77776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008289_040 0.0 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
2 Hb_021165_010 0.0539433119 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
3 Hb_016172_030 0.0601858779 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
4 Hb_000173_130 0.0620228151 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
5 Hb_065500_020 0.0631820119 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
6 Hb_000406_210 0.0645796606 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
7 Hb_000703_330 0.0660388843 - - conserved hypothetical protein [Ricinus communis]
8 Hb_028487_160 0.0702204397 - - clathrin assembly protein, putative [Ricinus communis]
9 Hb_002552_040 0.071025179 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
10 Hb_001250_050 0.0714108714 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
11 Hb_159809_070 0.0716526723 - - phospholipase A-2-activating protein, putative [Ricinus communis]
12 Hb_000227_160 0.072038278 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
13 Hb_002042_050 0.0731684937 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
14 Hb_002445_030 0.0747094404 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
15 Hb_000702_090 0.0750769457 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
16 Hb_001817_170 0.07522773 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
17 Hb_000815_300 0.0752812612 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
18 Hb_000139_080 0.0752974068 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
19 Hb_001279_190 0.0753376736 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
20 Hb_060980_010 0.0753901743 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_008289_040 Hb_008289_040 Hb_021165_010 Hb_021165_010 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_065500_020 Hb_065500_020 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330 Hb_000702_090 Hb_000702_090 Hb_021165_010--Hb_000702_090 Hb_021165_010--Hb_016172_030 Hb_000017_230 Hb_000017_230 Hb_021165_010--Hb_000017_230 Hb_060980_010 Hb_060980_010 Hb_021165_010--Hb_060980_010 Hb_001114_110 Hb_001114_110 Hb_021165_010--Hb_001114_110 Hb_016172_030--Hb_060980_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_027506_010 Hb_027506_010 Hb_016172_030--Hb_027506_010 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_002445_030 Hb_002445_030 Hb_000173_130--Hb_002445_030 Hb_002552_040 Hb_002552_040 Hb_000173_130--Hb_002552_040 Hb_000173_130--Hb_000703_330 Hb_000815_300 Hb_000815_300 Hb_000173_130--Hb_000815_300 Hb_016734_010 Hb_016734_010 Hb_000173_130--Hb_016734_010 Hb_065500_020--Hb_060980_010 Hb_002749_060 Hb_002749_060 Hb_065500_020--Hb_002749_060 Hb_011819_020 Hb_011819_020 Hb_065500_020--Hb_011819_020 Hb_065500_020--Hb_021165_010 Hb_005846_050 Hb_005846_050 Hb_000406_210--Hb_005846_050 Hb_001159_060 Hb_001159_060 Hb_000406_210--Hb_001159_060 Hb_000406_210--Hb_000815_300 Hb_000103_290 Hb_000103_290 Hb_000406_210--Hb_000103_290 Hb_000406_210--Hb_002552_040 Hb_007416_070 Hb_007416_070 Hb_000703_330--Hb_007416_070 Hb_000009_060 Hb_000009_060 Hb_000703_330--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_000703_330--Hb_000197_190 Hb_065968_010 Hb_065968_010 Hb_000703_330--Hb_065968_010 Hb_002639_030 Hb_002639_030 Hb_000703_330--Hb_002639_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06787 9.76552 12.5889 15.336 5.57537 5.98243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88463 5.73011 6.69062 12.7027 10.6239

CAGE analysis