Hb_001159_060

Information

Type -
Description -
Location Contig1159: 40158-54204
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11540g
description POPTRDRAFT_712319; KEULE family protein
nr
ID XP_012087094.1
description PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
swissprot
ID Q9C5X3
description SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2
trembl
ID A0A067JNN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20747 PE=4 SV=1
Gene Ontology
ID GO:0006904
description snare-interacting protein keule

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04771: 40338-54076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_060 0.0 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
2 Hb_000406_210 0.0589181541 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
3 Hb_000815_300 0.0688144153 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_000862_100 0.0715938527 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
5 Hb_000172_360 0.0742299127 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
6 Hb_005305_130 0.074578461 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
7 Hb_009158_060 0.0772228179 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
8 Hb_003058_140 0.0777711699 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001141_240 0.0778245727 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
10 Hb_021977_010 0.0796686149 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
11 Hb_001504_010 0.0800559871 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
12 Hb_048476_080 0.0803943231 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
13 Hb_000027_200 0.0821257422 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
14 Hb_003661_010 0.0833288314 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
15 Hb_013726_050 0.0842275549 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
16 Hb_001117_110 0.0855069347 - - PREDICTED: dynamin-2A [Jatropha curcas]
17 Hb_000976_110 0.0855277863 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
18 Hb_002045_170 0.0855763651 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
19 Hb_000317_110 0.0858240626 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_001250_050 0.0860328431 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001159_060 Hb_001159_060 Hb_000406_210 Hb_000406_210 Hb_001159_060--Hb_000406_210 Hb_000815_300 Hb_000815_300 Hb_001159_060--Hb_000815_300 Hb_000862_100 Hb_000862_100 Hb_001159_060--Hb_000862_100 Hb_000172_360 Hb_000172_360 Hb_001159_060--Hb_000172_360 Hb_005305_130 Hb_005305_130 Hb_001159_060--Hb_005305_130 Hb_009158_060 Hb_009158_060 Hb_001159_060--Hb_009158_060 Hb_005846_050 Hb_005846_050 Hb_000406_210--Hb_005846_050 Hb_000406_210--Hb_000815_300 Hb_008289_040 Hb_008289_040 Hb_000406_210--Hb_008289_040 Hb_000103_290 Hb_000103_290 Hb_000406_210--Hb_000103_290 Hb_002552_040 Hb_002552_040 Hb_000406_210--Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_006970_020 Hb_006970_020 Hb_000815_300--Hb_006970_020 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_004705_160 Hb_004705_160 Hb_000862_100--Hb_004705_160 Hb_000862_100--Hb_006970_020 Hb_068079_010 Hb_068079_010 Hb_000862_100--Hb_068079_010 Hb_000862_100--Hb_000815_300 Hb_000862_100--Hb_000406_210 Hb_003058_140 Hb_003058_140 Hb_000172_360--Hb_003058_140 Hb_005305_100 Hb_005305_100 Hb_000172_360--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_000172_360--Hb_000260_760 Hb_008165_020 Hb_008165_020 Hb_000172_360--Hb_008165_020 Hb_000172_360--Hb_009158_060 Hb_005305_130--Hb_009158_060 Hb_003661_010 Hb_003661_010 Hb_005305_130--Hb_003661_010 Hb_160608_010 Hb_160608_010 Hb_005305_130--Hb_160608_010 Hb_001414_010 Hb_001414_010 Hb_005305_130--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_005305_130--Hb_029552_020 Hb_009158_060--Hb_160608_010 Hb_009158_060--Hb_003661_010 Hb_000030_140 Hb_000030_140 Hb_009158_060--Hb_000030_140 Hb_008054_040 Hb_008054_040 Hb_009158_060--Hb_008054_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75074 9.76738 14.0964 12.5165 5.21659 4.77382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71204 4.15083 3.88952 8.72468 12.9213

CAGE analysis