Hb_008054_040

Information

Type -
Description -
Location Contig8054: 49214-70863
Sequence    

Annotation

kegg
ID rcu:RCOM_0632460
description cullin, putative
nr
ID XP_012072113.1
description PREDICTED: cullin-4 [Jatropha curcas]
swissprot
ID Q8LGH4
description Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1
trembl
ID A0A067KPB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04625 PE=3 SV=1
Gene Ontology
ID GO:0031461
description cullin-4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59030: 68702-68967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008054_040 0.0 - - PREDICTED: cullin-4 [Jatropha curcas]
2 Hb_005333_140 0.0641783319 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
3 Hb_009158_060 0.0744984031 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
4 Hb_033642_120 0.0775592454 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
5 Hb_000996_020 0.0789839164 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
6 Hb_032823_020 0.081682577 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002461_020 0.0818835297 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
8 Hb_160608_010 0.0824230352 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
9 Hb_000030_140 0.0828450007 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
10 Hb_000206_160 0.0835335415 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
11 Hb_003758_010 0.0835655862 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
12 Hb_003093_040 0.0839228272 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
13 Hb_001221_180 0.083931908 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_000321_140 0.084643724 - - RNA-binding protein, putative [Ricinus communis]
15 Hb_000034_110 0.0858656139 - - sentrin/sumo-specific protease, putative [Ricinus communis]
16 Hb_000975_210 0.0860388008 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
17 Hb_000173_190 0.0869772688 - - conserved hypothetical protein [Ricinus communis]
18 Hb_023344_140 0.0888007695 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
19 Hb_012633_050 0.0895983256 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000510_360 0.0904085291 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]

Gene co-expression network

sample Hb_008054_040 Hb_008054_040 Hb_005333_140 Hb_005333_140 Hb_008054_040--Hb_005333_140 Hb_009158_060 Hb_009158_060 Hb_008054_040--Hb_009158_060 Hb_033642_120 Hb_033642_120 Hb_008054_040--Hb_033642_120 Hb_000996_020 Hb_000996_020 Hb_008054_040--Hb_000996_020 Hb_032823_020 Hb_032823_020 Hb_008054_040--Hb_032823_020 Hb_002461_020 Hb_002461_020 Hb_008054_040--Hb_002461_020 Hb_005333_140--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_005333_140--Hb_000529_060 Hb_005333_140--Hb_000996_020 Hb_023344_140 Hb_023344_140 Hb_005333_140--Hb_023344_140 Hb_000046_600 Hb_000046_600 Hb_005333_140--Hb_000046_600 Hb_000189_630 Hb_000189_630 Hb_005333_140--Hb_000189_630 Hb_005305_130 Hb_005305_130 Hb_009158_060--Hb_005305_130 Hb_160608_010 Hb_160608_010 Hb_009158_060--Hb_160608_010 Hb_003661_010 Hb_003661_010 Hb_009158_060--Hb_003661_010 Hb_000172_360 Hb_000172_360 Hb_009158_060--Hb_000172_360 Hb_000030_140 Hb_000030_140 Hb_009158_060--Hb_000030_140 Hb_000868_120 Hb_000868_120 Hb_033642_120--Hb_000868_120 Hb_003470_040 Hb_003470_040 Hb_033642_120--Hb_003470_040 Hb_000207_200 Hb_000207_200 Hb_033642_120--Hb_000207_200 Hb_001439_220 Hb_001439_220 Hb_033642_120--Hb_001439_220 Hb_000661_120 Hb_000661_120 Hb_033642_120--Hb_000661_120 Hb_010287_020 Hb_010287_020 Hb_033642_120--Hb_010287_020 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_000996_020--Hb_002461_020 Hb_000996_020--Hb_000529_060 Hb_000996_020--Hb_000661_120 Hb_008206_080 Hb_008206_080 Hb_032823_020--Hb_008206_080 Hb_000878_160 Hb_000878_160 Hb_032823_020--Hb_000878_160 Hb_003093_040 Hb_003093_040 Hb_032823_020--Hb_003093_040 Hb_024758_020 Hb_024758_020 Hb_032823_020--Hb_024758_020 Hb_012633_050 Hb_012633_050 Hb_032823_020--Hb_012633_050 Hb_002461_020--Hb_000030_140 Hb_000260_760 Hb_000260_760 Hb_002461_020--Hb_000260_760 Hb_001221_090 Hb_001221_090 Hb_002461_020--Hb_001221_090 Hb_170077_010 Hb_170077_010 Hb_002461_020--Hb_170077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3646 19.8184 26.2794 14.0988 13.7566 7.37066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.31512 6.91617 8.46079 20.6738 20.5337

CAGE analysis