Hb_008206_080

Information

Type -
Description -
Location Contig8206: 70127-76694
Sequence    

Annotation

kegg
ID tcc:TCM_038600
description Cyclic nucleotide-gated channel 17 isoform 1
nr
ID XP_012077485.1
description PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
swissprot
ID Q8L7Z0
description Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1
trembl
ID A0A067KGZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07814 PE=4 SV=1
Gene Ontology
ID GO:0003723
description probable cyclic nucleotide-gated ion channel 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59588: 70072-76825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008206_080 0.0 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
2 Hb_000229_050 0.0654336356 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
3 Hb_000579_080 0.0743516883 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
4 Hb_012633_050 0.0772141814 - - zinc finger protein, putative [Ricinus communis]
5 Hb_159809_070 0.0777768037 - - phospholipase A-2-activating protein, putative [Ricinus communis]
6 Hb_008304_020 0.0799753469 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
7 Hb_000101_390 0.0827883212 - - PREDICTED: mucin-5B [Jatropha curcas]
8 Hb_033642_040 0.0829271078 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
9 Hb_000739_240 0.0833567419 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_016734_020 0.0845544578 - - sugar transporter, putative [Ricinus communis]
11 Hb_032823_020 0.0853418823 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000880_070 0.0871177004 - - gamma-tubulin complex component, putative [Ricinus communis]
13 Hb_000702_090 0.0892823784 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
14 Hb_000321_140 0.0894328814 - - RNA-binding protein, putative [Ricinus communis]
15 Hb_003093_040 0.0905575871 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
16 Hb_006189_020 0.0909439791 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
17 Hb_001227_120 0.0933605173 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
18 Hb_001504_010 0.094403981 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
19 Hb_003636_080 0.0957666503 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
20 Hb_002684_020 0.096470521 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]

Gene co-expression network

sample Hb_008206_080 Hb_008206_080 Hb_000229_050 Hb_000229_050 Hb_008206_080--Hb_000229_050 Hb_000579_080 Hb_000579_080 Hb_008206_080--Hb_000579_080 Hb_012633_050 Hb_012633_050 Hb_008206_080--Hb_012633_050 Hb_159809_070 Hb_159809_070 Hb_008206_080--Hb_159809_070 Hb_008304_020 Hb_008304_020 Hb_008206_080--Hb_008304_020 Hb_000101_390 Hb_000101_390 Hb_008206_080--Hb_000101_390 Hb_000229_050--Hb_000579_080 Hb_000229_050--Hb_012633_050 Hb_011716_010 Hb_011716_010 Hb_000229_050--Hb_011716_010 Hb_000739_240 Hb_000739_240 Hb_000229_050--Hb_000739_240 Hb_000229_050--Hb_000101_390 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_001504_010 Hb_001504_010 Hb_000579_080--Hb_001504_010 Hb_000579_080--Hb_012633_050 Hb_000579_080--Hb_008304_020 Hb_012633_050--Hb_001504_010 Hb_006438_020 Hb_006438_020 Hb_012633_050--Hb_006438_020 Hb_172979_010 Hb_172979_010 Hb_012633_050--Hb_172979_010 Hb_001227_120 Hb_001227_120 Hb_159809_070--Hb_001227_120 Hb_000078_140 Hb_000078_140 Hb_159809_070--Hb_000078_140 Hb_079526_040 Hb_079526_040 Hb_159809_070--Hb_079526_040 Hb_065968_010 Hb_065968_010 Hb_159809_070--Hb_065968_010 Hb_006189_020 Hb_006189_020 Hb_159809_070--Hb_006189_020 Hb_159809_070--Hb_008304_020 Hb_001635_110 Hb_001635_110 Hb_008304_020--Hb_001635_110 Hb_008304_020--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_008304_020--Hb_003098_070 Hb_007483_070 Hb_007483_070 Hb_008304_020--Hb_007483_070 Hb_008304_020--Hb_001504_010 Hb_001504_060 Hb_001504_060 Hb_000101_390--Hb_001504_060 Hb_002445_030 Hb_002445_030 Hb_000101_390--Hb_002445_030 Hb_002006_150 Hb_002006_150 Hb_000101_390--Hb_002006_150 Hb_006824_010 Hb_006824_010 Hb_000101_390--Hb_006824_010 Hb_002684_020 Hb_002684_020 Hb_000101_390--Hb_002684_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.51342 6.78232 15.9799 10.0945 5.84728 5.77183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.04354 4.81288 4.8715 13.7147 10.3239

CAGE analysis