Hb_012633_050

Information

Type -
Description -
Location Contig12633: 38258-45760
Sequence    

Annotation

kegg
ID rcu:RCOM_0452130
description zinc finger protein, putative (EC:1.3.1.74)
nr
ID XP_002531563.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q93VV0
description Probable protein S-acyltransferase 16 OS=Arabidopsis thaliana GN=PAT16 PE=2 SV=1
trembl
ID B9SZZ4
description S-acyltransferase OS=Ricinus communis GN=RCOM_0452130 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07972: 38217-45682 , PASA_asmbl_07974: 44121-44311 , PASA_asmbl_07975: 43709-43855 , PASA_asmbl_07977: 38951-39204 , PASA_asmbl_07978: 38191-42815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012633_050 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001504_010 0.068614691 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
3 Hb_000579_080 0.0691253831 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
4 Hb_006438_020 0.0707713695 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
5 Hb_000229_050 0.0729239619 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
6 Hb_008206_080 0.0772141814 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
7 Hb_172979_010 0.0772657583 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
8 Hb_021596_020 0.0782985438 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
9 Hb_001635_110 0.0801287742 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
10 Hb_000476_060 0.0802121814 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
11 Hb_003687_120 0.0807961047 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
12 Hb_008304_020 0.0825340625 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
13 Hb_000120_890 0.0825375215 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
14 Hb_002684_020 0.0829488058 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
15 Hb_000101_390 0.08570264 - - PREDICTED: mucin-5B [Jatropha curcas]
16 Hb_004324_360 0.0862682644 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
17 Hb_000173_190 0.0866981024 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003636_080 0.0879795578 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
19 Hb_011716_010 0.0880506439 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
20 Hb_008054_040 0.0895983256 - - PREDICTED: cullin-4 [Jatropha curcas]

Gene co-expression network

sample Hb_012633_050 Hb_012633_050 Hb_001504_010 Hb_001504_010 Hb_012633_050--Hb_001504_010 Hb_000579_080 Hb_000579_080 Hb_012633_050--Hb_000579_080 Hb_006438_020 Hb_006438_020 Hb_012633_050--Hb_006438_020 Hb_000229_050 Hb_000229_050 Hb_012633_050--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_012633_050--Hb_008206_080 Hb_172979_010 Hb_172979_010 Hb_012633_050--Hb_172979_010 Hb_007483_070 Hb_007483_070 Hb_001504_010--Hb_007483_070 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000163_260 Hb_000163_260 Hb_001504_010--Hb_000163_260 Hb_001504_010--Hb_000579_080 Hb_008304_020 Hb_008304_020 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_000579_080--Hb_000229_050 Hb_000579_080--Hb_008206_080 Hb_000579_080--Hb_008304_020 Hb_002445_030 Hb_002445_030 Hb_006438_020--Hb_002445_030 Hb_002687_180 Hb_002687_180 Hb_006438_020--Hb_002687_180 Hb_011716_010 Hb_011716_010 Hb_006438_020--Hb_011716_010 Hb_006438_020--Hb_021596_020 Hb_061256_010 Hb_061256_010 Hb_006438_020--Hb_061256_010 Hb_000229_050--Hb_008206_080 Hb_000229_050--Hb_011716_010 Hb_000739_240 Hb_000739_240 Hb_000229_050--Hb_000739_240 Hb_000101_390 Hb_000101_390 Hb_000229_050--Hb_000101_390 Hb_159809_070 Hb_159809_070 Hb_008206_080--Hb_159809_070 Hb_008206_080--Hb_008304_020 Hb_008206_080--Hb_000101_390 Hb_017193_010 Hb_017193_010 Hb_172979_010--Hb_017193_010 Hb_000076_210 Hb_000076_210 Hb_172979_010--Hb_000076_210 Hb_003687_120 Hb_003687_120 Hb_172979_010--Hb_003687_120 Hb_000120_890 Hb_000120_890 Hb_172979_010--Hb_000120_890 Hb_000160_140 Hb_000160_140 Hb_172979_010--Hb_000160_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.3329 12.9812 24.6921 13.9022 6.252 5.88318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.90633 8.12439 7.07633 16.0504 16.3733

CAGE analysis