Hb_003687_120

Information

Type -
Description -
Location Contig3687: 76629-86640
Sequence    

Annotation

kegg
ID tcc:TCM_020906
description AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein isoform 1
nr
ID XP_012069854.1
description PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
swissprot
ID Q2LZZ7
description Serine/threonine-protein kinase tricorner OS=Drosophila pseudoobscura pseudoobscura GN=trc PE=3 SV=1
trembl
ID A0A067KVX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02344 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase tricorner-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37922: 76628-86609 , PASA_asmbl_37923: 84412-86609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_120 0.0 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
2 Hb_003470_040 0.0705601221 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
3 Hb_008725_050 0.0706607238 - - syntaxin, putative [Ricinus communis]
4 Hb_003428_090 0.0717798272 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
5 Hb_000723_030 0.075942389 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
6 Hb_000890_160 0.0795019869 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
7 Hb_178968_060 0.0803774561 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
8 Hb_012633_050 0.0807961047 - - zinc finger protein, putative [Ricinus communis]
9 Hb_033642_120 0.0808501739 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
10 Hb_010775_030 0.0818427945 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
11 Hb_001300_280 0.0822464 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
12 Hb_026198_010 0.0822922623 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
13 Hb_006452_180 0.0827585785 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
14 Hb_010287_020 0.083982809 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
15 Hb_005977_030 0.0839967386 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
16 Hb_003636_080 0.0840710753 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
17 Hb_000120_890 0.0841311102 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
18 Hb_001500_120 0.0860486144 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000089_210 0.086186192 - - unknown [Medicago truncatula]
20 Hb_000476_060 0.0862811558 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_003687_120 Hb_003687_120 Hb_003470_040 Hb_003470_040 Hb_003687_120--Hb_003470_040 Hb_008725_050 Hb_008725_050 Hb_003687_120--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_003687_120--Hb_003428_090 Hb_000723_030 Hb_000723_030 Hb_003687_120--Hb_000723_030 Hb_000890_160 Hb_000890_160 Hb_003687_120--Hb_000890_160 Hb_178968_060 Hb_178968_060 Hb_003687_120--Hb_178968_060 Hb_029695_080 Hb_029695_080 Hb_003470_040--Hb_029695_080 Hb_000207_200 Hb_000207_200 Hb_003470_040--Hb_000207_200 Hb_033642_120 Hb_033642_120 Hb_003470_040--Hb_033642_120 Hb_000089_210 Hb_000089_210 Hb_003470_040--Hb_000089_210 Hb_002110_160 Hb_002110_160 Hb_003470_040--Hb_002110_160 Hb_006452_180 Hb_006452_180 Hb_008725_050--Hb_006452_180 Hb_000956_040 Hb_000956_040 Hb_008725_050--Hb_000956_040 Hb_008725_050--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_008725_050--Hb_000156_090 Hb_008725_050--Hb_003428_090 Hb_060094_010 Hb_060094_010 Hb_003428_090--Hb_060094_010 Hb_000866_140 Hb_000866_140 Hb_003428_090--Hb_000866_140 Hb_003428_090--Hb_000156_090 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150 Hb_003428_090--Hb_000890_160 Hb_004225_060 Hb_004225_060 Hb_000723_030--Hb_004225_060 Hb_000160_140 Hb_000160_140 Hb_000723_030--Hb_000160_140 Hb_002203_030 Hb_002203_030 Hb_000723_030--Hb_002203_030 Hb_001500_120 Hb_001500_120 Hb_000723_030--Hb_001500_120 Hb_029622_120 Hb_029622_120 Hb_000723_030--Hb_029622_120 Hb_006468_010 Hb_006468_010 Hb_000890_160--Hb_006468_010 Hb_000890_160--Hb_000866_140 Hb_010068_070 Hb_010068_070 Hb_000890_160--Hb_010068_070 Hb_001635_110 Hb_001635_110 Hb_178968_060--Hb_001635_110 Hb_000230_460 Hb_000230_460 Hb_178968_060--Hb_000230_460 Hb_001300_280 Hb_001300_280 Hb_178968_060--Hb_001300_280 Hb_003498_100 Hb_003498_100 Hb_178968_060--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_178968_060--Hb_000120_890 Hb_001221_440 Hb_001221_440 Hb_178968_060--Hb_001221_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5457 25.6047 37.8614 20.9555 9.14436 8.28964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.94943 13.7282 9.50992 20.8628 15.731

CAGE analysis