Hb_006468_010

Information

Type -
Description -
Location Contig6468: 13052-20513
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11310g
description POPTRDRAFT_835945; MIF4G domain-containing family protein
nr
ID XP_012071533.1
description PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
swissprot
ID Q93ZT6
description Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1
trembl
ID A0A067KR86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04054 PE=4 SV=1
Gene Ontology
ID GO:0003743
description mif4g domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52342: 13061-20799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006468_010 0.0 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
2 Hb_000890_160 0.0524876225 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
3 Hb_003636_080 0.0680516351 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
4 Hb_000297_030 0.0696426627 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
5 Hb_016461_020 0.0776254958 - - conserved hypothetical protein [Ricinus communis]
6 Hb_115137_010 0.0798604032 - - PREDICTED: probable protein S-acyltransferase 23 isoform X2 [Jatropha curcas]
7 Hb_089140_040 0.0833905995 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
8 Hb_006502_030 0.0847849088 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
9 Hb_060094_010 0.0851039485 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
10 Hb_021165_010 0.0854717911 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
11 Hb_000926_260 0.086676062 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001250_050 0.0884363589 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
13 Hb_012092_050 0.0906566875 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
14 Hb_002687_180 0.0907994862 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
15 Hb_002740_090 0.0929734557 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
16 Hb_003687_120 0.0938997749 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
17 Hb_000260_770 0.0953144977 - - er lumen protein retaining receptor, putative [Ricinus communis]
18 Hb_000702_090 0.0954553023 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
19 Hb_004079_130 0.0974095036 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
20 Hb_001004_140 0.0974525874 - - hypothetical protein JCGZ_26893 [Jatropha curcas]

Gene co-expression network

sample Hb_006468_010 Hb_006468_010 Hb_000890_160 Hb_000890_160 Hb_006468_010--Hb_000890_160 Hb_003636_080 Hb_003636_080 Hb_006468_010--Hb_003636_080 Hb_000297_030 Hb_000297_030 Hb_006468_010--Hb_000297_030 Hb_016461_020 Hb_016461_020 Hb_006468_010--Hb_016461_020 Hb_115137_010 Hb_115137_010 Hb_006468_010--Hb_115137_010 Hb_089140_040 Hb_089140_040 Hb_006468_010--Hb_089140_040 Hb_008725_050 Hb_008725_050 Hb_000890_160--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_000890_160--Hb_003428_090 Hb_003687_120 Hb_003687_120 Hb_000890_160--Hb_003687_120 Hb_000866_140 Hb_000866_140 Hb_000890_160--Hb_000866_140 Hb_010068_070 Hb_010068_070 Hb_000890_160--Hb_010068_070 Hb_001300_280 Hb_001300_280 Hb_003636_080--Hb_001300_280 Hb_011674_040 Hb_011674_040 Hb_003636_080--Hb_011674_040 Hb_000173_190 Hb_000173_190 Hb_003636_080--Hb_000173_190 Hb_000318_150 Hb_000318_150 Hb_003636_080--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_003636_080--Hb_000787_200 Hb_158845_060 Hb_158845_060 Hb_000297_030--Hb_158845_060 Hb_000297_030--Hb_016461_020 Hb_000297_030--Hb_000890_160 Hb_000046_600 Hb_000046_600 Hb_000297_030--Hb_000046_600 Hb_024758_020 Hb_024758_020 Hb_000297_030--Hb_024758_020 Hb_000890_030 Hb_000890_030 Hb_016461_020--Hb_000890_030 Hb_005305_100 Hb_005305_100 Hb_016461_020--Hb_005305_100 Hb_016461_020--Hb_000046_600 Hb_000579_130 Hb_000579_130 Hb_016461_020--Hb_000579_130 Hb_060094_010 Hb_060094_010 Hb_115137_010--Hb_060094_010 Hb_001250_050 Hb_001250_050 Hb_115137_010--Hb_001250_050 Hb_115137_010--Hb_005305_100 Hb_000120_810 Hb_000120_810 Hb_115137_010--Hb_000120_810 Hb_115137_010--Hb_003428_090 Hb_012092_050 Hb_012092_050 Hb_089140_040--Hb_012092_050 Hb_005489_140 Hb_005489_140 Hb_089140_040--Hb_005489_140 Hb_005215_020 Hb_005215_020 Hb_089140_040--Hb_005215_020 Hb_000008_420 Hb_000008_420 Hb_089140_040--Hb_000008_420 Hb_015026_130 Hb_015026_130 Hb_089140_040--Hb_015026_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.063 59.1356 72.5524 68.264 23.0805 27.8181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1361 24.2426 16.9982 64.8043 33.6674

CAGE analysis