Hb_012092_050

Information

Type -
Description -
Location Contig12092: 36579-42134
Sequence    

Annotation

kegg
ID pop:POPTR_0004s12210g
description hypothetical protein
nr
ID XP_012084720.1
description PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9MAC5
description Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=1 SV=1
trembl
ID A0A067K5U1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19863 PE=4 SV=1
Gene Ontology
ID GO:0000932
description polypyrimidine tract-binding protein homolog 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06443: 37209-37354 , PASA_asmbl_06445: 36789-42939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012092_050 0.0 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
2 Hb_007257_060 0.0590828156 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
3 Hb_002014_010 0.0686728324 - - Uncharacterized protein isoform 1 [Theobroma cacao]
4 Hb_001300_280 0.0703843846 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
5 Hb_001635_110 0.0730969566 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
6 Hb_006588_060 0.0750687954 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
7 Hb_004109_320 0.0753056428 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
8 Hb_000008_420 0.0753773599 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
9 Hb_002982_020 0.0756348921 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
10 Hb_007472_070 0.0769456988 - - cir, putative [Ricinus communis]
11 Hb_000803_270 0.0770247875 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
12 Hb_004705_170 0.0780800821 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
13 Hb_001357_310 0.0784463336 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
14 Hb_000402_150 0.0791621821 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
15 Hb_086063_020 0.0794759425 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
16 Hb_000702_090 0.080082699 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
17 Hb_000778_010 0.0809216951 - - hypothetical protein [Bacillus subtilis]
18 Hb_163175_010 0.0811648242 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
19 Hb_000215_300 0.0817500099 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
20 Hb_016172_030 0.0827017082 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]

Gene co-expression network

sample Hb_012092_050 Hb_012092_050 Hb_007257_060 Hb_007257_060 Hb_012092_050--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_012092_050--Hb_002014_010 Hb_001300_280 Hb_001300_280 Hb_012092_050--Hb_001300_280 Hb_001635_110 Hb_001635_110 Hb_012092_050--Hb_001635_110 Hb_006588_060 Hb_006588_060 Hb_012092_050--Hb_006588_060 Hb_004109_320 Hb_004109_320 Hb_012092_050--Hb_004109_320 Hb_007257_060--Hb_001300_280 Hb_001357_310 Hb_001357_310 Hb_007257_060--Hb_001357_310 Hb_000008_420 Hb_000008_420 Hb_007257_060--Hb_000008_420 Hb_007257_060--Hb_006588_060 Hb_000402_150 Hb_000402_150 Hb_007257_060--Hb_000402_150 Hb_000019_190 Hb_000019_190 Hb_002014_010--Hb_000019_190 Hb_007248_030 Hb_007248_030 Hb_002014_010--Hb_007248_030 Hb_002014_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_002014_010--Hb_171900_090 Hb_000702_090 Hb_000702_090 Hb_002014_010--Hb_000702_090 Hb_000365_230 Hb_000365_230 Hb_002014_010--Hb_000365_230 Hb_001300_280--Hb_001635_110 Hb_178968_060 Hb_178968_060 Hb_001300_280--Hb_178968_060 Hb_000173_190 Hb_000173_190 Hb_001300_280--Hb_000173_190 Hb_003636_080 Hb_003636_080 Hb_001300_280--Hb_003636_080 Hb_001300_280--Hb_006588_060 Hb_001635_110--Hb_178968_060 Hb_008304_020 Hb_008304_020 Hb_001635_110--Hb_008304_020 Hb_001635_110--Hb_000173_190 Hb_006189_020 Hb_006189_020 Hb_001635_110--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_001635_110--Hb_003098_070 Hb_008114_040 Hb_008114_040 Hb_006588_060--Hb_008114_040 Hb_010775_030 Hb_010775_030 Hb_006588_060--Hb_010775_030 Hb_006588_060--Hb_000008_420 Hb_050847_050 Hb_050847_050 Hb_006588_060--Hb_050847_050 Hb_007894_150 Hb_007894_150 Hb_004109_320--Hb_007894_150 Hb_004109_320--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_004109_320--Hb_164390_010 Hb_002849_130 Hb_002849_130 Hb_004109_320--Hb_002849_130 Hb_000477_050 Hb_000477_050 Hb_004109_320--Hb_000477_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86681 10.8687 12.3842 13.2394 6.49763 5.47428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93647 8.72556 4.65394 12.7714 7.93987

CAGE analysis