Hb_008114_040

Information

Type -
Description -
Location Contig8114: 47833-66819
Sequence    

Annotation

kegg
ID rcu:RCOM_0973340
description hypothetical protein
nr
ID KHG09784.1
description Fanconi anemia group D2 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NDC7
description Fanconi anemia group D2 OS=Gossypium arboreum GN=F383_11520 PE=4 SV=1
Gene Ontology
ID GO:0006259
description fanconi anemia group d2 protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59262: 58889-59090 , PASA_asmbl_59263: 59503-62030 , PASA_asmbl_59264: 61028-61433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008114_040 0.0 - - Fanconi anemia group D2 [Gossypium arboreum]
2 Hb_000402_150 0.0525333648 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
3 Hb_000189_600 0.0679026004 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
4 Hb_004333_040 0.0696551351 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
5 Hb_006588_060 0.071450576 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
6 Hb_002400_340 0.0743344206 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
7 Hb_000617_230 0.0758358378 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
8 Hb_003430_050 0.0760541169 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
9 Hb_002445_100 0.0786327791 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
10 Hb_000684_510 0.0801249331 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
11 Hb_004586_060 0.0808738817 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
12 Hb_183433_010 0.082732992 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
13 Hb_012092_050 0.0835769417 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
14 Hb_003636_080 0.0836901017 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
15 Hb_002014_010 0.0838720911 - - Uncharacterized protein isoform 1 [Theobroma cacao]
16 Hb_007955_050 0.0840388507 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
17 Hb_000513_090 0.0841896363 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
18 Hb_004109_320 0.0843178847 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
19 Hb_007894_150 0.0852616587 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
20 Hb_033312_040 0.0853844602 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008114_040 Hb_008114_040 Hb_000402_150 Hb_000402_150 Hb_008114_040--Hb_000402_150 Hb_000189_600 Hb_000189_600 Hb_008114_040--Hb_000189_600 Hb_004333_040 Hb_004333_040 Hb_008114_040--Hb_004333_040 Hb_006588_060 Hb_006588_060 Hb_008114_040--Hb_006588_060 Hb_002400_340 Hb_002400_340 Hb_008114_040--Hb_002400_340 Hb_000617_230 Hb_000617_230 Hb_008114_040--Hb_000617_230 Hb_000684_510 Hb_000684_510 Hb_000402_150--Hb_000684_510 Hb_001878_050 Hb_001878_050 Hb_000402_150--Hb_001878_050 Hb_001357_310 Hb_001357_310 Hb_000402_150--Hb_001357_310 Hb_012092_050 Hb_012092_050 Hb_000402_150--Hb_012092_050 Hb_000402_150--Hb_006588_060 Hb_000189_600--Hb_004333_040 Hb_183433_010 Hb_183433_010 Hb_000189_600--Hb_183433_010 Hb_000189_600--Hb_000617_230 Hb_001377_190 Hb_001377_190 Hb_000189_600--Hb_001377_190 Hb_001430_080 Hb_001430_080 Hb_000189_600--Hb_001430_080 Hb_000521_330 Hb_000521_330 Hb_000189_600--Hb_000521_330 Hb_006189_020 Hb_006189_020 Hb_004333_040--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_004333_040--Hb_033312_040 Hb_000699_150 Hb_000699_150 Hb_004333_040--Hb_000699_150 Hb_000510_360 Hb_000510_360 Hb_004333_040--Hb_000510_360 Hb_004333_040--Hb_183433_010 Hb_001300_280 Hb_001300_280 Hb_006588_060--Hb_001300_280 Hb_010775_030 Hb_010775_030 Hb_006588_060--Hb_010775_030 Hb_000008_420 Hb_000008_420 Hb_006588_060--Hb_000008_420 Hb_006588_060--Hb_012092_050 Hb_050847_050 Hb_050847_050 Hb_006588_060--Hb_050847_050 Hb_164390_010 Hb_164390_010 Hb_002400_340--Hb_164390_010 Hb_004109_320 Hb_004109_320 Hb_002400_340--Hb_004109_320 Hb_000339_040 Hb_000339_040 Hb_002400_340--Hb_000339_040 Hb_163175_010 Hb_163175_010 Hb_002400_340--Hb_163175_010 Hb_001456_060 Hb_001456_060 Hb_002400_340--Hb_001456_060 Hb_171900_090 Hb_171900_090 Hb_002400_340--Hb_171900_090 Hb_000617_230--Hb_001430_080 Hb_000617_230--Hb_001878_050 Hb_003835_070 Hb_003835_070 Hb_000617_230--Hb_003835_070 Hb_001279_170 Hb_001279_170 Hb_000617_230--Hb_001279_170 Hb_001009_280 Hb_001009_280 Hb_000617_230--Hb_001009_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13162 1.55842 2.19826 1.43413 0.778709 1.24464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.972452 1.15529 0.771109 2.03874 1.20991

CAGE analysis