Hb_163175_010

Information

Type -
Description -
Location Contig163175: 877-2065
Sequence    

Annotation

kegg
ID cit:102623012
description serine/arginine repetitive matrix protein 5-like
nr
ID KDO74964.1
description hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067G5V0
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036035mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14865: 921-2584 , PASA_asmbl_14867: 921-3307 , PASA_asmbl_14868: 884-3559 , PASA_asmbl_14869: 2615-2853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163175_010 0.0 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
2 Hb_164390_010 0.0537874989 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
3 Hb_171900_090 0.0597855866 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000365_230 0.061884671 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
5 Hb_001959_110 0.0629477166 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
6 Hb_183433_010 0.0629908715 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
7 Hb_004705_170 0.0660708586 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
8 Hb_000976_140 0.0666887543 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
9 Hb_000019_190 0.0678499857 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
10 Hb_002936_010 0.0681664673 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
11 Hb_002986_100 0.068477665 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
12 Hb_002400_340 0.0692981175 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
13 Hb_005271_040 0.0696442958 - - PREDICTED: serine racemase [Jatropha curcas]
14 Hb_000329_800 0.0697814393 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000663_060 0.0700327559 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
16 Hb_000803_270 0.0708806313 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
17 Hb_000336_210 0.0711063023 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
18 Hb_002014_010 0.0712818789 - - Uncharacterized protein isoform 1 [Theobroma cacao]
19 Hb_008616_050 0.0714771474 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
20 Hb_004319_080 0.071707631 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_163175_010 Hb_163175_010 Hb_164390_010 Hb_164390_010 Hb_163175_010--Hb_164390_010 Hb_171900_090 Hb_171900_090 Hb_163175_010--Hb_171900_090 Hb_000365_230 Hb_000365_230 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170 Hb_164390_010--Hb_000365_230 Hb_007894_150 Hb_007894_150 Hb_164390_010--Hb_007894_150 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_004109_320 Hb_004109_320 Hb_164390_010--Hb_004109_320 Hb_164390_010--Hb_171900_090 Hb_000789_320 Hb_000789_320 Hb_171900_090--Hb_000789_320 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_000176_020 Hb_000176_020 Hb_171900_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_171900_090--Hb_001025_090 Hb_000365_230--Hb_004109_320 Hb_000365_230--Hb_007894_150 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_062226_130 Hb_062226_130 Hb_000365_230--Hb_062226_130 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010 Hb_000313_220 Hb_000313_220 Hb_001959_110--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_001959_110--Hb_000976_140 Hb_000331_090 Hb_000331_090 Hb_001959_110--Hb_000331_090 Hb_000035_470 Hb_000035_470 Hb_001959_110--Hb_000035_470 Hb_001922_150 Hb_001922_150 Hb_001959_110--Hb_001922_150 Hb_183433_010--Hb_000976_140 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_183433_010--Hb_000365_230 Hb_000215_300 Hb_000215_300 Hb_004705_170--Hb_000215_300 Hb_007472_070 Hb_007472_070 Hb_004705_170--Hb_007472_070 Hb_000345_160 Hb_000345_160 Hb_004705_170--Hb_000345_160 Hb_004037_020 Hb_004037_020 Hb_004705_170--Hb_004037_020 Hb_004705_170--Hb_000778_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6823 15.9943 26.8901 25.6728 13.8623 17.6816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9113 22.2372 12.1878 22.8964 17.7347

CAGE analysis