Hb_178968_060

Information

Type -
Description -
Location Contig178968: 35927-44500
Sequence    

Annotation

kegg
ID cit:102620700
description ubiquitin receptor RAD23b-like
nr
ID XP_012484759.1
description PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
swissprot
ID Q84L33
description Ubiquitin receptor RAD23b OS=Arabidopsis thaliana GN=RAD23B PE=1 SV=3
trembl
ID A0A0D2SUE1
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G091100 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin receptor rad23b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17254: 43713-44519 , PASA_asmbl_17255: 36092-44519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178968_060 0.0 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
2 Hb_001635_110 0.0486705232 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
3 Hb_000230_460 0.0631502841 - - Speckle-type POZ protein, putative [Ricinus communis]
4 Hb_001300_280 0.0642095781 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
5 Hb_003498_100 0.064709908 - - component of oligomeric golgi complex, putative [Ricinus communis]
6 Hb_000120_890 0.0701998019 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
7 Hb_001221_440 0.071366461 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
8 Hb_000173_190 0.0751039093 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003687_120 0.0803774561 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
10 Hb_033642_120 0.082195378 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
11 Hb_008304_020 0.0830655858 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
12 Hb_001504_010 0.0839305528 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
13 Hb_012092_050 0.0844091177 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
14 Hb_003626_070 0.0845883464 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
15 Hb_000476_060 0.0856019882 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
16 Hb_000680_120 0.0873372448 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
17 Hb_007483_070 0.0883244794 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
18 Hb_002110_160 0.0887716616 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
19 Hb_002014_010 0.089374508 - - Uncharacterized protein isoform 1 [Theobroma cacao]
20 Hb_001279_190 0.089559843 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_178968_060 Hb_178968_060 Hb_001635_110 Hb_001635_110 Hb_178968_060--Hb_001635_110 Hb_000230_460 Hb_000230_460 Hb_178968_060--Hb_000230_460 Hb_001300_280 Hb_001300_280 Hb_178968_060--Hb_001300_280 Hb_003498_100 Hb_003498_100 Hb_178968_060--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_178968_060--Hb_000120_890 Hb_001221_440 Hb_001221_440 Hb_178968_060--Hb_001221_440 Hb_008304_020 Hb_008304_020 Hb_001635_110--Hb_008304_020 Hb_000173_190 Hb_000173_190 Hb_001635_110--Hb_000173_190 Hb_001635_110--Hb_001300_280 Hb_006189_020 Hb_006189_020 Hb_001635_110--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_001635_110--Hb_003098_070 Hb_002435_100 Hb_002435_100 Hb_000230_460--Hb_002435_100 Hb_000176_020 Hb_000176_020 Hb_000230_460--Hb_000176_020 Hb_000137_010 Hb_000137_010 Hb_000230_460--Hb_000137_010 Hb_007254_020 Hb_007254_020 Hb_000230_460--Hb_007254_020 Hb_000160_140 Hb_000160_140 Hb_000230_460--Hb_000160_140 Hb_001300_280--Hb_000173_190 Hb_003636_080 Hb_003636_080 Hb_001300_280--Hb_003636_080 Hb_006588_060 Hb_006588_060 Hb_001300_280--Hb_006588_060 Hb_012092_050 Hb_012092_050 Hb_001300_280--Hb_012092_050 Hb_003498_100--Hb_000120_890 Hb_089839_010 Hb_089839_010 Hb_003498_100--Hb_089839_010 Hb_001279_190 Hb_001279_190 Hb_003498_100--Hb_001279_190 Hb_000703_190 Hb_000703_190 Hb_003498_100--Hb_000703_190 Hb_001799_160 Hb_001799_160 Hb_003498_100--Hb_001799_160 Hb_000476_060 Hb_000476_060 Hb_000120_890--Hb_000476_060 Hb_001504_010 Hb_001504_010 Hb_000120_890--Hb_001504_010 Hb_000120_890--Hb_008304_020 Hb_018790_020 Hb_018790_020 Hb_000120_890--Hb_018790_020 Hb_000111_170 Hb_000111_170 Hb_001221_440--Hb_000111_170 Hb_065525_080 Hb_065525_080 Hb_001221_440--Hb_065525_080 Hb_000019_190 Hb_000019_190 Hb_001221_440--Hb_000019_190 Hb_001221_440--Hb_001635_110 Hb_171900_090 Hb_171900_090 Hb_001221_440--Hb_171900_090 Hb_002014_010 Hb_002014_010 Hb_001221_440--Hb_002014_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.10207 10.4482 14.8333 11.2504 6.1352 3.46622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.17407 8.53481 4.28267 8.88584 9.20675

CAGE analysis