Hb_089839_010

Information

Type -
Description -
Location Contig89839: 14399-22611
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24980g
description POPTRDRAFT_830588; glycosyl transferase family 2 family protein
nr
ID XP_012085176.1
description PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
swissprot
ID Q9SRT3
description Probable xyloglucan glycosyltransferase 6 OS=Arabidopsis thaliana GN=CSLC6 PE=1 SV=1
trembl
ID A0A067LDJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15138 PE=4 SV=1
Gene Ontology
ID GO:0000139
description probable xyloglucan glycosyltransferase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61799: 14405-17485 , PASA_asmbl_61802: 21002-21282 , PASA_asmbl_61803: 22075-22686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089839_010 0.0 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
2 Hb_000476_060 0.0611140052 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
3 Hb_003498_100 0.0678324188 - - component of oligomeric golgi complex, putative [Ricinus communis]
4 Hb_000703_190 0.0710356219 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
5 Hb_018790_020 0.0749097536 - - protein kinase, putative [Ricinus communis]
6 Hb_000089_210 0.0750853128 - - unknown [Medicago truncatula]
7 Hb_003098_070 0.0769991611 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
8 Hb_000120_890 0.0773587083 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
9 Hb_002716_060 0.0795454817 - - carboxylesterase np, putative [Ricinus communis]
10 Hb_001703_040 0.0805185792 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
11 Hb_004109_320 0.0805628407 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
12 Hb_000365_230 0.0814180585 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
13 Hb_001025_120 0.0821195319 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
14 Hb_000028_520 0.0846055994 - - hypothetical protein L484_025125 [Morus notabilis]
15 Hb_000260_460 0.0858256834 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
16 Hb_000025_350 0.0873360668 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
17 Hb_000705_230 0.0880835364 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
18 Hb_006573_040 0.0884271851 - - DNA binding protein, putative [Ricinus communis]
19 Hb_001761_120 0.0891640362 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
20 Hb_004100_050 0.0894060953 - - PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_089839_010 Hb_089839_010 Hb_000476_060 Hb_000476_060 Hb_089839_010--Hb_000476_060 Hb_003498_100 Hb_003498_100 Hb_089839_010--Hb_003498_100 Hb_000703_190 Hb_000703_190 Hb_089839_010--Hb_000703_190 Hb_018790_020 Hb_018790_020 Hb_089839_010--Hb_018790_020 Hb_000089_210 Hb_000089_210 Hb_089839_010--Hb_000089_210 Hb_003098_070 Hb_003098_070 Hb_089839_010--Hb_003098_070 Hb_000476_060--Hb_003098_070 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000788_030 Hb_000788_030 Hb_000476_060--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_000476_060--Hb_004324_360 Hb_000120_890 Hb_000120_890 Hb_000476_060--Hb_000120_890 Hb_003498_100--Hb_000120_890 Hb_178968_060 Hb_178968_060 Hb_003498_100--Hb_178968_060 Hb_001279_190 Hb_001279_190 Hb_003498_100--Hb_001279_190 Hb_003498_100--Hb_000703_190 Hb_001799_160 Hb_001799_160 Hb_003498_100--Hb_001799_160 Hb_000260_460 Hb_000260_460 Hb_000703_190--Hb_000260_460 Hb_000078_140 Hb_000078_140 Hb_000703_190--Hb_000078_140 Hb_001817_170 Hb_001817_170 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_000317_040 Hb_000317_040 Hb_000703_190--Hb_000317_040 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070 Hb_001025_120 Hb_001025_120 Hb_018790_020--Hb_001025_120 Hb_007894_150 Hb_007894_150 Hb_018790_020--Hb_007894_150 Hb_000028_520 Hb_000028_520 Hb_018790_020--Hb_000028_520 Hb_002716_060 Hb_002716_060 Hb_018790_020--Hb_002716_060 Hb_000365_230 Hb_000365_230 Hb_018790_020--Hb_000365_230 Hb_004109_320 Hb_004109_320 Hb_018790_020--Hb_004109_320 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_000207_200 Hb_000207_200 Hb_000089_210--Hb_000207_200 Hb_002909_040 Hb_002909_040 Hb_000089_210--Hb_002909_040 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_004096_160 Hb_004096_160 Hb_000089_210--Hb_004096_160 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030 Hb_003098_070--Hb_000139_080 Hb_003098_070--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_003098_070--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_003098_070--Hb_033312_040 Hb_003098_070--Hb_000078_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.14729 5.5431 10.12 8.03712 3.49545 3.02164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7565 4.86957 5.47335 5.21479 5.58374

CAGE analysis