Hb_005977_030

Information

Type -
Description -
Location Contig5977: 8439-12326
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012249mg
description hypothetical protein
nr
ID XP_012085184.1
description PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
swissprot
ID Q8GWS0
description Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=1 SV=1
trembl
ID A0A067JUF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17596 PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50417: 8434-12377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005977_030 0.0 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
2 Hb_001500_120 0.0593573528 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_000089_210 0.0631366052 - - unknown [Medicago truncatula]
4 Hb_003470_040 0.0773385974 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
5 Hb_000476_060 0.0778257764 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
6 Hb_004712_190 0.0793928591 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
7 Hb_011671_310 0.0816573524 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
8 Hb_000085_170 0.0825208809 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
9 Hb_003687_120 0.0839967386 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
10 Hb_006452_180 0.0846616458 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
11 Hb_000120_890 0.0858146748 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
12 Hb_029695_080 0.0870878245 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
13 Hb_000207_200 0.0890609915 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
14 Hb_010775_030 0.0895140058 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
15 Hb_002909_040 0.0900838449 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
16 Hb_000048_080 0.091501216 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
17 Hb_004096_160 0.0926914135 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
18 Hb_002326_110 0.0927540192 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
19 Hb_000230_460 0.0937098527 - - Speckle-type POZ protein, putative [Ricinus communis]
20 Hb_000723_030 0.0940003413 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005977_030 Hb_005977_030 Hb_001500_120 Hb_001500_120 Hb_005977_030--Hb_001500_120 Hb_000089_210 Hb_000089_210 Hb_005977_030--Hb_000089_210 Hb_003470_040 Hb_003470_040 Hb_005977_030--Hb_003470_040 Hb_000476_060 Hb_000476_060 Hb_005977_030--Hb_000476_060 Hb_004712_190 Hb_004712_190 Hb_005977_030--Hb_004712_190 Hb_011671_310 Hb_011671_310 Hb_005977_030--Hb_011671_310 Hb_000723_030 Hb_000723_030 Hb_001500_120--Hb_000723_030 Hb_001500_120--Hb_004712_190 Hb_002311_480 Hb_002311_480 Hb_001500_120--Hb_002311_480 Hb_001500_120--Hb_011671_310 Hb_001500_120--Hb_003470_040 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_000207_200 Hb_000207_200 Hb_000089_210--Hb_000207_200 Hb_002909_040 Hb_002909_040 Hb_000089_210--Hb_002909_040 Hb_004096_160 Hb_004096_160 Hb_000089_210--Hb_004096_160 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030 Hb_029695_080 Hb_029695_080 Hb_003470_040--Hb_029695_080 Hb_003470_040--Hb_000207_200 Hb_033642_120 Hb_033642_120 Hb_003470_040--Hb_033642_120 Hb_003687_120 Hb_003687_120 Hb_003470_040--Hb_003687_120 Hb_003470_040--Hb_000089_210 Hb_002110_160 Hb_002110_160 Hb_003470_040--Hb_002110_160 Hb_003098_070 Hb_003098_070 Hb_000476_060--Hb_003098_070 Hb_089839_010 Hb_089839_010 Hb_000476_060--Hb_089839_010 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000788_030 Hb_000788_030 Hb_000476_060--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_000476_060--Hb_004324_360 Hb_000120_890 Hb_000120_890 Hb_000476_060--Hb_000120_890 Hb_014231_020 Hb_014231_020 Hb_004712_190--Hb_014231_020 Hb_005144_210 Hb_005144_210 Hb_004712_190--Hb_005144_210 Hb_002686_080 Hb_002686_080 Hb_004712_190--Hb_002686_080 Hb_001191_080 Hb_001191_080 Hb_004712_190--Hb_001191_080 Hb_011671_310--Hb_002311_480 Hb_001005_020 Hb_001005_020 Hb_011671_310--Hb_001005_020 Hb_001761_120 Hb_001761_120 Hb_011671_310--Hb_001761_120 Hb_007290_030 Hb_007290_030 Hb_011671_310--Hb_007290_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.45249 10.7654 19.4104 10.004 5.09028 5.98595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.96186 6.15091 5.99616 7.57287 7.21523

CAGE analysis