Hb_001191_080

Information

Type -
Description -
Location Contig1191: 93851-99497
Sequence    

Annotation

kegg
ID rcu:RCOM_0297010
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002527104.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q41640
description Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1
trembl
ID B9SM85
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0297010 PE=3 SV=1
Gene Ontology
ID GO:0005774
description ras-related protein rab7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05644: 96194-96503 , PASA_asmbl_05645: 93718-99329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001191_080 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_007741_130 0.0868308444 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
3 Hb_004712_190 0.0871199484 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
4 Hb_021576_150 0.0910055486 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
5 Hb_000926_200 0.0940962415 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
6 Hb_014231_020 0.0973969317 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
7 Hb_005245_120 0.0999014853 - - XPA-binding protein, putative [Ricinus communis]
8 Hb_000622_130 0.1012740614 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
9 Hb_000120_810 0.1017620494 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
10 Hb_000089_210 0.1018493641 - - unknown [Medicago truncatula]
11 Hb_005977_030 0.1023171233 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
12 Hb_003449_100 0.1043161202 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
13 Hb_006452_180 0.1053977444 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
14 Hb_010098_020 0.1068904694 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_001950_070 0.1077068969 - - cyclin d, putative [Ricinus communis]
16 Hb_001863_160 0.1100637827 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
17 Hb_002615_070 0.1104457804 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
18 Hb_004079_130 0.1111142614 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
19 Hb_000230_460 0.1114050639 - - Speckle-type POZ protein, putative [Ricinus communis]
20 Hb_000003_680 0.1115080617 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]

Gene co-expression network

sample Hb_001191_080 Hb_001191_080 Hb_007741_130 Hb_007741_130 Hb_001191_080--Hb_007741_130 Hb_004712_190 Hb_004712_190 Hb_001191_080--Hb_004712_190 Hb_021576_150 Hb_021576_150 Hb_001191_080--Hb_021576_150 Hb_000926_200 Hb_000926_200 Hb_001191_080--Hb_000926_200 Hb_014231_020 Hb_014231_020 Hb_001191_080--Hb_014231_020 Hb_005245_120 Hb_005245_120 Hb_001191_080--Hb_005245_120 Hb_001633_090 Hb_001633_090 Hb_007741_130--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_007741_130--Hb_007850_030 Hb_007741_130--Hb_005245_120 Hb_001863_160 Hb_001863_160 Hb_007741_130--Hb_001863_160 Hb_053709_050 Hb_053709_050 Hb_007741_130--Hb_053709_050 Hb_004712_190--Hb_014231_020 Hb_001500_120 Hb_001500_120 Hb_004712_190--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_004712_190--Hb_005977_030 Hb_005144_210 Hb_005144_210 Hb_004712_190--Hb_005144_210 Hb_002686_080 Hb_002686_080 Hb_004712_190--Hb_002686_080 Hb_000003_680 Hb_000003_680 Hb_021576_150--Hb_000003_680 Hb_001799_160 Hb_001799_160 Hb_021576_150--Hb_001799_160 Hb_012286_020 Hb_012286_020 Hb_021576_150--Hb_012286_020 Hb_000566_050 Hb_000566_050 Hb_021576_150--Hb_000566_050 Hb_000787_080 Hb_000787_080 Hb_021576_150--Hb_000787_080 Hb_000035_160 Hb_000035_160 Hb_000926_200--Hb_000035_160 Hb_040819_010 Hb_040819_010 Hb_000926_200--Hb_040819_010 Hb_032202_100 Hb_032202_100 Hb_000926_200--Hb_032202_100 Hb_004984_030 Hb_004984_030 Hb_000926_200--Hb_004984_030 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_014231_020--Hb_001863_160 Hb_000703_160 Hb_000703_160 Hb_014231_020--Hb_000703_160 Hb_014231_020--Hb_005144_210 Hb_000009_220 Hb_000009_220 Hb_014231_020--Hb_000009_220 Hb_001307_190 Hb_001307_190 Hb_014231_020--Hb_001307_190 Hb_005245_120--Hb_032202_100 Hb_005245_120--Hb_000926_200 Hb_001804_080 Hb_001804_080 Hb_005245_120--Hb_001804_080 Hb_000116_490 Hb_000116_490 Hb_005245_120--Hb_000116_490 Hb_001357_310 Hb_001357_310 Hb_005245_120--Hb_001357_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06249 9.98675 18.841 14.6405 3.86082 4.81081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.49747 8.74524 5.05567 5.1 5.51236

CAGE analysis