Hb_000566_050

Information

Type -
Description -
Location Contig566: 51839-54229
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16670g
description POPTRDRAFT_554746; hypothetical protein
nr
ID XP_012085726.1
description PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3L1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17998 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49038: 51826-54226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_050 0.0 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
2 Hb_012286_020 0.0569145861 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
3 Hb_004003_030 0.0917391787 - - conserved hypothetical protein [Ricinus communis]
4 Hb_021576_150 0.0953529088 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
5 Hb_001799_160 0.097099204 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_171554_010 0.1003227124 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
7 Hb_004032_320 0.1050530787 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
8 Hb_002333_070 0.1054381271 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
9 Hb_000003_680 0.1063688252 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
10 Hb_005332_080 0.1081836046 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
11 Hb_000012_270 0.1083198474 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
12 Hb_001703_040 0.109330375 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
13 Hb_000318_220 0.1101809639 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012438_030 0.1110159877 - - PREDICTED: protein sym-1 [Jatropha curcas]
15 Hb_002631_240 0.1121987994 - - JHL17M24.3 [Jatropha curcas]
16 Hb_002218_020 0.1140697321 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
17 Hb_000086_270 0.1150953006 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
18 Hb_000788_030 0.1154836978 - - PREDICTED: dynamin-2A [Jatropha curcas]
19 Hb_061256_010 0.1167142231 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
20 Hb_000320_190 0.1178983874 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000566_050 Hb_000566_050 Hb_012286_020 Hb_012286_020 Hb_000566_050--Hb_012286_020 Hb_004003_030 Hb_004003_030 Hb_000566_050--Hb_004003_030 Hb_021576_150 Hb_021576_150 Hb_000566_050--Hb_021576_150 Hb_001799_160 Hb_001799_160 Hb_000566_050--Hb_001799_160 Hb_171554_010 Hb_171554_010 Hb_000566_050--Hb_171554_010 Hb_004032_320 Hb_004032_320 Hb_000566_050--Hb_004032_320 Hb_000003_680 Hb_000003_680 Hb_012286_020--Hb_000003_680 Hb_002218_020 Hb_002218_020 Hb_012286_020--Hb_002218_020 Hb_012286_020--Hb_021576_150 Hb_102948_010 Hb_102948_010 Hb_012286_020--Hb_102948_010 Hb_000086_270 Hb_000086_270 Hb_012286_020--Hb_000086_270 Hb_004003_030--Hb_001799_160 Hb_000787_080 Hb_000787_080 Hb_004003_030--Hb_000787_080 Hb_004003_030--Hb_000003_680 Hb_004003_030--Hb_021576_150 Hb_000318_220 Hb_000318_220 Hb_004003_030--Hb_000318_220 Hb_021576_150--Hb_000003_680 Hb_021576_150--Hb_001799_160 Hb_001191_080 Hb_001191_080 Hb_021576_150--Hb_001191_080 Hb_021576_150--Hb_000787_080 Hb_001799_160--Hb_000318_220 Hb_003498_100 Hb_003498_100 Hb_001799_160--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_001799_160--Hb_000120_890 Hb_001504_010 Hb_001504_010 Hb_001799_160--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_001799_160--Hb_007483_070 Hb_001053_190 Hb_001053_190 Hb_001799_160--Hb_001053_190 Hb_000003_780 Hb_000003_780 Hb_171554_010--Hb_000003_780 Hb_171554_010--Hb_000003_680 Hb_087313_010 Hb_087313_010 Hb_171554_010--Hb_087313_010 Hb_001900_140 Hb_001900_140 Hb_171554_010--Hb_001900_140 Hb_012438_030 Hb_012438_030 Hb_171554_010--Hb_012438_030 Hb_171554_010--Hb_012286_020 Hb_002684_020 Hb_002684_020 Hb_004032_320--Hb_002684_020 Hb_001102_070 Hb_001102_070 Hb_004032_320--Hb_001102_070 Hb_000453_030 Hb_000453_030 Hb_004032_320--Hb_000453_030 Hb_004032_320--Hb_001799_160 Hb_001633_200 Hb_001633_200 Hb_004032_320--Hb_001633_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.675 9.44027 29.6906 15.0898 4.74323 5.88995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.51412 7.02961 12.0524 5.05245 14.8905

CAGE analysis