Hb_000787_080

Information

Type -
Description -
Location Contig787: 112283-119576
Sequence    

Annotation

kegg
ID rcu:RCOM_0184790
description hypothetical protein
nr
ID XP_012070753.1
description PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
swissprot
ID Q9CXF4
description TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1
trembl
ID A0A067L4Q4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00826 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58123: 114099-114299 , PASA_asmbl_58124: 114564-115011 , PASA_asmbl_58125: 112809-119359 , PASA_asmbl_58126: 117477-117754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_080 0.0 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
2 Hb_001766_070 0.0796005017 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000003_680 0.0796383591 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
4 Hb_000258_420 0.0860269423 - - sucrose transporter 2A [Hevea brasiliensis]
5 Hb_000815_310 0.0914470209 - - protein kinase, putative [Ricinus communis]
6 Hb_033152_090 0.0923879211 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
7 Hb_000137_010 0.0927863973 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
8 Hb_000680_120 0.0935208405 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
9 Hb_004003_030 0.0948953123 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000318_220 0.0953288119 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000086_270 0.0962891089 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
12 Hb_021576_150 0.0965396694 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
13 Hb_012286_020 0.0968758909 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
14 Hb_003449_100 0.1017873846 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
15 Hb_004712_190 0.1035484739 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
16 Hb_001582_020 0.1035729541 - - plastid acyl-ACP thioesterase [Vernicia fordii]
17 Hb_061256_010 0.1059347597 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
18 Hb_002249_020 0.1061566493 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
19 Hb_003687_080 0.1079777295 - - PREDICTED: casein kinase I-like [Jatropha curcas]
20 Hb_001729_020 0.1099914792 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000787_080 Hb_000787_080 Hb_001766_070 Hb_001766_070 Hb_000787_080--Hb_001766_070 Hb_000003_680 Hb_000003_680 Hb_000787_080--Hb_000003_680 Hb_000258_420 Hb_000258_420 Hb_000787_080--Hb_000258_420 Hb_000815_310 Hb_000815_310 Hb_000787_080--Hb_000815_310 Hb_033152_090 Hb_033152_090 Hb_000787_080--Hb_033152_090 Hb_000137_010 Hb_000137_010 Hb_000787_080--Hb_000137_010 Hb_000673_010 Hb_000673_010 Hb_001766_070--Hb_000673_010 Hb_001766_070--Hb_000137_010 Hb_000270_600 Hb_000270_600 Hb_001766_070--Hb_000270_600 Hb_001409_060 Hb_001409_060 Hb_001766_070--Hb_001409_060 Hb_008120_040 Hb_008120_040 Hb_001766_070--Hb_008120_040 Hb_012286_020 Hb_012286_020 Hb_000003_680--Hb_012286_020 Hb_087313_010 Hb_087313_010 Hb_000003_680--Hb_087313_010 Hb_021576_150 Hb_021576_150 Hb_000003_680--Hb_021576_150 Hb_002218_020 Hb_002218_020 Hb_000003_680--Hb_002218_020 Hb_102948_010 Hb_102948_010 Hb_000003_680--Hb_102948_010 Hb_000258_420--Hb_033152_090 Hb_003777_130 Hb_003777_130 Hb_000258_420--Hb_003777_130 Hb_001699_010 Hb_001699_010 Hb_000258_420--Hb_001699_010 Hb_002272_240 Hb_002272_240 Hb_000258_420--Hb_002272_240 Hb_000680_120 Hb_000680_120 Hb_000258_420--Hb_000680_120 Hb_004531_150 Hb_004531_150 Hb_000258_420--Hb_004531_150 Hb_003540_250 Hb_003540_250 Hb_000815_310--Hb_003540_250 Hb_000815_310--Hb_003777_130 Hb_000815_310--Hb_033152_090 Hb_002965_050 Hb_002965_050 Hb_000815_310--Hb_002965_050 Hb_007416_260 Hb_007416_260 Hb_000815_310--Hb_007416_260 Hb_002876_210 Hb_002876_210 Hb_000815_310--Hb_002876_210 Hb_000640_190 Hb_000640_190 Hb_033152_090--Hb_000640_190 Hb_001009_120 Hb_001009_120 Hb_033152_090--Hb_001009_120 Hb_000956_040 Hb_000956_040 Hb_033152_090--Hb_000956_040 Hb_033152_090--Hb_003777_130 Hb_000137_010--Hb_000680_120 Hb_000137_010--Hb_000956_040 Hb_000230_460 Hb_000230_460 Hb_000137_010--Hb_000230_460 Hb_000788_030 Hb_000788_030 Hb_000137_010--Hb_000788_030 Hb_005305_100 Hb_005305_100 Hb_000137_010--Hb_005305_100 Hb_004774_090 Hb_004774_090 Hb_000137_010--Hb_004774_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.07341 11.7546 19.1113 12.5415 3.06572 2.98083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.58219 4.056 4.33819 3.89412 8.95498

CAGE analysis