Hb_000258_420

Information

Type -
Description -
Location Contig258: 394222-401731
Sequence    

Annotation

kegg
ID rcu:RCOM_0697230
description sucrose transport protein, putative
nr
ID ABJ51934.1
description sucrose transporter 2A [Hevea brasiliensis]
swissprot
ID O80605
description Sucrose transport protein SUC3 OS=Arabidopsis thaliana GN=SUC3 PE=1 SV=1
trembl
ID Q000Y6
description Sucrose transporter 2A OS=Hevea brasiliensis GN=SUT2A PE=2 SV=1
Gene Ontology
ID GO:0005794
description sucrose transporter 2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26855: 394104-401724 , PASA_asmbl_26856: 400548-400896 , PASA_asmbl_26857: 400432-401186 , PASA_asmbl_26859: 395247-395396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_420 0.0 - - sucrose transporter 2A [Hevea brasiliensis]
2 Hb_033152_090 0.0589429682 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
3 Hb_003777_130 0.0626559206 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
4 Hb_001699_010 0.080951527 - - drought-inducible protein [Manihot esculenta]
5 Hb_002272_240 0.0841723681 - - catalytic, putative [Ricinus communis]
6 Hb_000680_120 0.0844415567 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
7 Hb_004531_150 0.0854484746 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
8 Hb_000787_080 0.0860269423 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
9 Hb_000815_310 0.086234212 - - protein kinase, putative [Ricinus communis]
10 Hb_000640_190 0.0863665711 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
11 Hb_003449_100 0.087888409 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
12 Hb_002965_050 0.0878929441 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
13 Hb_002304_050 0.0905215948 - - pyruvate kinase, putative [Ricinus communis]
14 Hb_005288_140 0.0909876613 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
15 Hb_007919_110 0.0920640073 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
16 Hb_002249_020 0.0921224473 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
17 Hb_000137_010 0.0924569889 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
18 Hb_003018_030 0.0926487016 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
19 Hb_005305_100 0.0928371331 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_000261_280 0.0934717911 - - BnaA10g23810D [Brassica napus]

Gene co-expression network

sample Hb_000258_420 Hb_000258_420 Hb_033152_090 Hb_033152_090 Hb_000258_420--Hb_033152_090 Hb_003777_130 Hb_003777_130 Hb_000258_420--Hb_003777_130 Hb_001699_010 Hb_001699_010 Hb_000258_420--Hb_001699_010 Hb_002272_240 Hb_002272_240 Hb_000258_420--Hb_002272_240 Hb_000680_120 Hb_000680_120 Hb_000258_420--Hb_000680_120 Hb_004531_150 Hb_004531_150 Hb_000258_420--Hb_004531_150 Hb_000640_190 Hb_000640_190 Hb_033152_090--Hb_000640_190 Hb_001009_120 Hb_001009_120 Hb_033152_090--Hb_001009_120 Hb_000956_040 Hb_000956_040 Hb_033152_090--Hb_000956_040 Hb_000815_310 Hb_000815_310 Hb_033152_090--Hb_000815_310 Hb_033152_090--Hb_003777_130 Hb_003777_130--Hb_000815_310 Hb_004375_110 Hb_004375_110 Hb_003777_130--Hb_004375_110 Hb_000671_030 Hb_000671_030 Hb_003777_130--Hb_000671_030 Hb_003777_130--Hb_000640_190 Hb_000089_210 Hb_000089_210 Hb_001699_010--Hb_000089_210 Hb_010287_020 Hb_010287_020 Hb_001699_010--Hb_010287_020 Hb_004994_240 Hb_004994_240 Hb_001699_010--Hb_004994_240 Hb_000120_910 Hb_000120_910 Hb_001699_010--Hb_000120_910 Hb_000120_030 Hb_000120_030 Hb_001699_010--Hb_000120_030 Hb_000110_350 Hb_000110_350 Hb_001699_010--Hb_000110_350 Hb_013726_050 Hb_013726_050 Hb_002272_240--Hb_013726_050 Hb_001691_040 Hb_001691_040 Hb_002272_240--Hb_001691_040 Hb_007919_110 Hb_007919_110 Hb_002272_240--Hb_007919_110 Hb_006120_050 Hb_006120_050 Hb_002272_240--Hb_006120_050 Hb_002304_050 Hb_002304_050 Hb_002272_240--Hb_002304_050 Hb_001754_020 Hb_001754_020 Hb_002272_240--Hb_001754_020 Hb_000137_010 Hb_000137_010 Hb_000680_120--Hb_000137_010 Hb_000230_460 Hb_000230_460 Hb_000680_120--Hb_000230_460 Hb_000120_810 Hb_000120_810 Hb_000680_120--Hb_000120_810 Hb_178968_060 Hb_178968_060 Hb_000680_120--Hb_178968_060 Hb_000788_030 Hb_000788_030 Hb_000680_120--Hb_000788_030 Hb_001504_010 Hb_001504_010 Hb_004531_150--Hb_001504_010 Hb_005305_100 Hb_005305_100 Hb_004531_150--Hb_005305_100 Hb_003506_030 Hb_003506_030 Hb_004531_150--Hb_003506_030 Hb_006261_050 Hb_006261_050 Hb_004531_150--Hb_006261_050 Hb_001541_150 Hb_001541_150 Hb_004531_150--Hb_001541_150 Hb_021596_020 Hb_021596_020 Hb_004531_150--Hb_021596_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.00241 18.9172 20.352 19.576 6.90244 4.99114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15767 7.28031 5.83415 6.93765 12.4492

CAGE analysis