Hb_001754_020

Information

Type -
Description -
Location Contig1754: 9734-17666
Sequence    

Annotation

kegg
ID rcu:RCOM_0681240
description kif4, putative
nr
ID XP_012083948.1
description PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
swissprot
ID Q940B8
description Kinesin-13A OS=Arabidopsis thaliana GN=KINESIN-13A PE=1 SV=1
trembl
ID A0A067K7L7
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_18884 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-13a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16781: 9978-17785 , PASA_asmbl_16782: 9978-17162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_020 0.0 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
2 Hb_003975_010 0.0803126251 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
3 Hb_021576_070 0.0816075845 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
4 Hb_001691_040 0.0818545272 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
5 Hb_010672_020 0.0823459255 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
6 Hb_002272_240 0.0833327568 - - catalytic, putative [Ricinus communis]
7 Hb_116349_120 0.0865949716 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000395_110 0.086868074 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
9 Hb_000265_140 0.0891172616 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
10 Hb_009252_030 0.0897475406 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
11 Hb_004109_050 0.0921609972 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
12 Hb_005192_010 0.0922821884 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
13 Hb_013726_050 0.0925000296 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
14 Hb_001029_040 0.0937148232 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
15 Hb_000665_170 0.0953085574 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
16 Hb_007545_010 0.0966596976 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
17 Hb_003209_130 0.0967166363 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
18 Hb_000570_020 0.0974593807 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
19 Hb_000256_230 0.1005137216 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
20 Hb_000260_510 0.1023305461 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001754_020 Hb_001754_020 Hb_003975_010 Hb_003975_010 Hb_001754_020--Hb_003975_010 Hb_021576_070 Hb_021576_070 Hb_001754_020--Hb_021576_070 Hb_001691_040 Hb_001691_040 Hb_001754_020--Hb_001691_040 Hb_010672_020 Hb_010672_020 Hb_001754_020--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_001754_020--Hb_002272_240 Hb_116349_120 Hb_116349_120 Hb_001754_020--Hb_116349_120 Hb_003975_010--Hb_001691_040 Hb_005192_010 Hb_005192_010 Hb_003975_010--Hb_005192_010 Hb_000912_100 Hb_000912_100 Hb_003975_010--Hb_000912_100 Hb_002046_060 Hb_002046_060 Hb_003975_010--Hb_002046_060 Hb_009252_030 Hb_009252_030 Hb_003975_010--Hb_009252_030 Hb_000152_710 Hb_000152_710 Hb_021576_070--Hb_000152_710 Hb_004109_050 Hb_004109_050 Hb_021576_070--Hb_004109_050 Hb_000701_030 Hb_000701_030 Hb_021576_070--Hb_000701_030 Hb_001216_110 Hb_001216_110 Hb_021576_070--Hb_001216_110 Hb_000418_020 Hb_000418_020 Hb_021576_070--Hb_000418_020 Hb_001691_040--Hb_002272_240 Hb_001691_040--Hb_000912_100 Hb_000395_040 Hb_000395_040 Hb_001691_040--Hb_000395_040 Hb_002876_210 Hb_002876_210 Hb_001691_040--Hb_002876_210 Hb_011310_110 Hb_011310_110 Hb_010672_020--Hb_011310_110 Hb_000705_230 Hb_000705_230 Hb_010672_020--Hb_000705_230 Hb_000665_170 Hb_000665_170 Hb_010672_020--Hb_000665_170 Hb_000395_110 Hb_000395_110 Hb_010672_020--Hb_000395_110 Hb_007545_010 Hb_007545_010 Hb_010672_020--Hb_007545_010 Hb_006120_050 Hb_006120_050 Hb_010672_020--Hb_006120_050 Hb_013726_050 Hb_013726_050 Hb_002272_240--Hb_013726_050 Hb_007919_110 Hb_007919_110 Hb_002272_240--Hb_007919_110 Hb_002272_240--Hb_006120_050 Hb_002304_050 Hb_002304_050 Hb_002272_240--Hb_002304_050 Hb_000510_170 Hb_000510_170 Hb_116349_120--Hb_000510_170 Hb_001117_110 Hb_001117_110 Hb_116349_120--Hb_001117_110 Hb_116349_120--Hb_013726_050 Hb_005694_060 Hb_005694_060 Hb_116349_120--Hb_005694_060 Hb_000570_020 Hb_000570_020 Hb_116349_120--Hb_000570_020 Hb_000375_300 Hb_000375_300 Hb_116349_120--Hb_000375_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.04831 14.9836 15.3245 33.7949 6.60023 6.12495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33684 5.73469 10.6957 10.6543 19.7631

CAGE analysis