Hb_003975_010

Information

Type -
Description -
Location Contig3975: 40293-41408
Sequence    

Annotation

kegg
ID rcu:RCOM_0700320
description hypothetical protein
nr
ID XP_012071480.1
description PREDICTED: protein RTF2 homolog [Jatropha curcas]
swissprot
ID A5GFW7
description Protein RTF2 homolog OS=Sus scrofa GN=RTFDC1 PE=3 SV=1
trembl
ID A0A067KR13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39632: 40163-41611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003975_010 0.0 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
2 Hb_001691_040 0.066843507 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
3 Hb_005192_010 0.0799267623 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_001754_020 0.0803126251 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
5 Hb_000912_100 0.0906771909 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
6 Hb_002046_060 0.0985807268 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
7 Hb_009252_030 0.0996030452 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
8 Hb_003777_030 0.1011601037 - - Exocyst complex component, putative [Ricinus communis]
9 Hb_003209_130 0.1047084137 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
10 Hb_007545_010 0.1059348077 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
11 Hb_002272_240 0.1074427357 - - catalytic, putative [Ricinus communis]
12 Hb_023344_150 0.1092097806 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
13 Hb_000570_020 0.111279564 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
14 Hb_001029_040 0.1118708745 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
15 Hb_116349_120 0.1127896762 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000665_170 0.1137226027 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
17 Hb_005977_100 0.1140720732 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
18 Hb_000664_090 0.1143151267 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
19 Hb_132082_010 0.1146502921 - - hypothetical protein VITISV_030895 [Vitis vinifera]
20 Hb_000418_020 0.1150204072 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003975_010 Hb_003975_010 Hb_001691_040 Hb_001691_040 Hb_003975_010--Hb_001691_040 Hb_005192_010 Hb_005192_010 Hb_003975_010--Hb_005192_010 Hb_001754_020 Hb_001754_020 Hb_003975_010--Hb_001754_020 Hb_000912_100 Hb_000912_100 Hb_003975_010--Hb_000912_100 Hb_002046_060 Hb_002046_060 Hb_003975_010--Hb_002046_060 Hb_009252_030 Hb_009252_030 Hb_003975_010--Hb_009252_030 Hb_002272_240 Hb_002272_240 Hb_001691_040--Hb_002272_240 Hb_001691_040--Hb_000912_100 Hb_001691_040--Hb_001754_020 Hb_000395_040 Hb_000395_040 Hb_001691_040--Hb_000395_040 Hb_002876_210 Hb_002876_210 Hb_001691_040--Hb_002876_210 Hb_001029_040 Hb_001029_040 Hb_005192_010--Hb_001029_040 Hb_003746_010 Hb_003746_010 Hb_005192_010--Hb_003746_010 Hb_000300_510 Hb_000300_510 Hb_005192_010--Hb_000300_510 Hb_000922_060 Hb_000922_060 Hb_005192_010--Hb_000922_060 Hb_005192_010--Hb_001754_020 Hb_021576_070 Hb_021576_070 Hb_001754_020--Hb_021576_070 Hb_010672_020 Hb_010672_020 Hb_001754_020--Hb_010672_020 Hb_001754_020--Hb_002272_240 Hb_116349_120 Hb_116349_120 Hb_001754_020--Hb_116349_120 Hb_002217_090 Hb_002217_090 Hb_000912_100--Hb_002217_090 Hb_000417_300 Hb_000417_300 Hb_000912_100--Hb_000417_300 Hb_000912_100--Hb_002046_060 Hb_000912_100--Hb_002876_210 Hb_001699_170 Hb_001699_170 Hb_002046_060--Hb_001699_170 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_006469_070 Hb_006469_070 Hb_002046_060--Hb_006469_070 Hb_000012_240 Hb_000012_240 Hb_002046_060--Hb_000012_240 Hb_009252_030--Hb_001029_040 Hb_009252_030--Hb_001754_020 Hb_005977_100 Hb_005977_100 Hb_009252_030--Hb_005977_100 Hb_000265_140 Hb_000265_140 Hb_009252_030--Hb_000265_140 Hb_001946_180 Hb_001946_180 Hb_009252_030--Hb_001946_180 Hb_000058_110 Hb_000058_110 Hb_009252_030--Hb_000058_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4149 38.0832 26.163 65.8662 11.7632 12.0924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2912 17.1357 12.7785 19.9937 39.0447

CAGE analysis