Hb_001946_180

Information

Type -
Description -
Location Contig1946: 189715-191963
Sequence    

Annotation

kegg
ID rcu:RCOM_0223690
description hypothetical protein
nr
ID XP_002524490.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SES1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0223690 PE=4 SV=1
Gene Ontology
ID GO:0005794
description nodulation protein noei

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19401: 189765-191401 , PASA_asmbl_19402: 191421-191672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002289_060 0.0768745967 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012651_010 0.0804376654 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
4 Hb_001842_010 0.0820463184 - - serine/threonine protein kinase, putative [Ricinus communis]
5 Hb_000049_020 0.0861542221 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
6 Hb_138585_080 0.0870001231 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
7 Hb_002226_080 0.0885162706 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
8 Hb_000679_230 0.0923786003 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
9 Hb_003097_140 0.0923948404 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
10 Hb_003052_180 0.093057028 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
11 Hb_000390_050 0.0931876907 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
12 Hb_001029_040 0.0933389846 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
13 Hb_005977_100 0.0935923965 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
14 Hb_009252_030 0.0937451876 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
15 Hb_000237_050 0.0962212248 - - CP2 [Hevea brasiliensis]
16 Hb_008406_180 0.0969211828 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
17 Hb_000359_310 0.0970527465 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
18 Hb_009569_040 0.0980402223 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
19 Hb_001440_020 0.0990430983 - - exocyst componenet sec8, putative [Ricinus communis]
20 Hb_000256_150 0.0992987537 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001946_180 Hb_001946_180 Hb_002289_060 Hb_002289_060 Hb_001946_180--Hb_002289_060 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_001842_010 Hb_001842_010 Hb_001946_180--Hb_001842_010 Hb_000049_020 Hb_000049_020 Hb_001946_180--Hb_000049_020 Hb_138585_080 Hb_138585_080 Hb_001946_180--Hb_138585_080 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_000062_540 Hb_000062_540 Hb_002289_060--Hb_000062_540 Hb_001157_230 Hb_001157_230 Hb_002289_060--Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_002289_060--Hb_001876_040 Hb_001916_090 Hb_001916_090 Hb_002289_060--Hb_001916_090 Hb_034585_010 Hb_034585_010 Hb_002289_060--Hb_034585_010 Hb_000002_480 Hb_000002_480 Hb_012651_010--Hb_000002_480 Hb_000890_230 Hb_000890_230 Hb_012651_010--Hb_000890_230 Hb_000429_050 Hb_000429_050 Hb_012651_010--Hb_000429_050 Hb_000140_350 Hb_000140_350 Hb_012651_010--Hb_000140_350 Hb_000984_310 Hb_000984_310 Hb_012651_010--Hb_000984_310 Hb_003052_180 Hb_003052_180 Hb_001842_010--Hb_003052_180 Hb_000679_230 Hb_000679_230 Hb_001842_010--Hb_000679_230 Hb_005218_020 Hb_005218_020 Hb_001842_010--Hb_005218_020 Hb_002804_040 Hb_002804_040 Hb_001842_010--Hb_002804_040 Hb_000853_200 Hb_000853_200 Hb_001842_010--Hb_000853_200 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000345_160 Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_000256_150 Hb_000256_150 Hb_000049_020--Hb_000256_150 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_009296_080 Hb_009296_080 Hb_138585_080--Hb_009296_080 Hb_001029_040 Hb_001029_040 Hb_138585_080--Hb_001029_040 Hb_000504_180 Hb_000504_180 Hb_138585_080--Hb_000504_180 Hb_002874_110 Hb_002874_110 Hb_138585_080--Hb_002874_110 Hb_000465_280 Hb_000465_280 Hb_138585_080--Hb_000465_280 Hb_000056_130 Hb_000056_130 Hb_002226_080--Hb_000056_130 Hb_000004_020 Hb_000004_020 Hb_002226_080--Hb_000004_020 Hb_009569_040 Hb_009569_040 Hb_002226_080--Hb_009569_040 Hb_000058_110 Hb_000058_110 Hb_002226_080--Hb_000058_110 Hb_002928_090 Hb_002928_090 Hb_002226_080--Hb_002928_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.01255 5.33003 4.37687 15.8103 4.14806 4.8223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.06912 3.49867 5.12438 5.55414 9.54404

CAGE analysis