Hb_001916_090

Information

Type -
Description -
Location Contig1916: 93706-96787
Sequence    

Annotation

kegg
ID rcu:RCOM_0347110
description beta-1,2-n-acetylglucosaminyltransferase II, putative (EC:2.4.1.143)
nr
ID XP_002530215.1
description beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
swissprot
ID O19071
description Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Sus scrofa GN=MGAT2 PE=3 SV=1
trembl
ID B9SW46
description Beta-1,2-n-acetylglucosaminyltransferase II, putative OS=Ricinus communis GN=RCOM_0347110 PE=4 SV=1
Gene Ontology
ID GO:0005795
description alpha- -mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19116: 93476-93868 , PASA_asmbl_19117: 93881-96468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001916_090 0.0 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
2 Hb_002289_060 0.0849759506 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000409_030 0.091479728 - - PREDICTED: uncharacterized protein LOC105642693 [Jatropha curcas]
4 Hb_000359_210 0.0958605018 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000941_150 0.0973067722 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
6 Hb_007416_210 0.0995194964 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
7 Hb_003206_110 0.1001214303 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
8 Hb_004679_030 0.1016929916 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
9 Hb_126976_010 0.1028060719 - - -
10 Hb_043792_040 0.1037301077 - - hypothetical protein, partial [Rosa rugosa]
11 Hb_000976_100 0.1055650916 - - eukaryotic translation elongation factor, putative [Ricinus communis]
12 Hb_000809_230 0.1066672657 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
13 Hb_000679_230 0.1067793327 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
14 Hb_138585_080 0.108300709 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
15 Hb_004046_030 0.1100572747 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
16 Hb_005650_010 0.1103710829 - - ATP binding protein, putative [Ricinus communis]
17 Hb_001936_130 0.1112298609 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
18 Hb_009569_040 0.1120623518 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
19 Hb_003544_160 0.1122903646 - - -
20 Hb_011228_010 0.1124301592 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001916_090 Hb_001916_090 Hb_002289_060 Hb_002289_060 Hb_001916_090--Hb_002289_060 Hb_000409_030 Hb_000409_030 Hb_001916_090--Hb_000409_030 Hb_000359_210 Hb_000359_210 Hb_001916_090--Hb_000359_210 Hb_000941_150 Hb_000941_150 Hb_001916_090--Hb_000941_150 Hb_007416_210 Hb_007416_210 Hb_001916_090--Hb_007416_210 Hb_003206_110 Hb_003206_110 Hb_001916_090--Hb_003206_110 Hb_000062_540 Hb_000062_540 Hb_002289_060--Hb_000062_540 Hb_001946_180 Hb_001946_180 Hb_002289_060--Hb_001946_180 Hb_001157_230 Hb_001157_230 Hb_002289_060--Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_002289_060--Hb_001876_040 Hb_034585_010 Hb_034585_010 Hb_002289_060--Hb_034585_010 Hb_004679_030 Hb_004679_030 Hb_000409_030--Hb_004679_030 Hb_000409_030--Hb_000941_150 Hb_002768_060 Hb_002768_060 Hb_000409_030--Hb_002768_060 Hb_000976_100 Hb_000976_100 Hb_000409_030--Hb_000976_100 Hb_009296_080 Hb_009296_080 Hb_000409_030--Hb_009296_080 Hb_012114_100 Hb_012114_100 Hb_000409_030--Hb_012114_100 Hb_002897_090 Hb_002897_090 Hb_000359_210--Hb_002897_090 Hb_002027_080 Hb_002027_080 Hb_000359_210--Hb_002027_080 Hb_001195_400 Hb_001195_400 Hb_000359_210--Hb_001195_400 Hb_002874_110 Hb_002874_110 Hb_000359_210--Hb_002874_110 Hb_000359_210--Hb_004679_030 Hb_000359_210--Hb_003206_110 Hb_000941_150--Hb_000976_100 Hb_002099_080 Hb_002099_080 Hb_000941_150--Hb_002099_080 Hb_000183_030 Hb_000183_030 Hb_000941_150--Hb_000183_030 Hb_000922_030 Hb_000922_030 Hb_000941_150--Hb_000922_030 Hb_007820_010 Hb_007820_010 Hb_000941_150--Hb_007820_010 Hb_000390_050 Hb_000390_050 Hb_007416_210--Hb_000390_050 Hb_003097_140 Hb_003097_140 Hb_007416_210--Hb_003097_140 Hb_003994_220 Hb_003994_220 Hb_007416_210--Hb_003994_220 Hb_043792_040 Hb_043792_040 Hb_007416_210--Hb_043792_040 Hb_007765_040 Hb_007765_040 Hb_007416_210--Hb_007765_040 Hb_003340_010 Hb_003340_010 Hb_007416_210--Hb_003340_010 Hb_170138_010 Hb_170138_010 Hb_003206_110--Hb_170138_010 Hb_004046_030 Hb_004046_030 Hb_003206_110--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_003206_110--Hb_000185_220 Hb_003206_110--Hb_001195_400 Hb_006277_010 Hb_006277_010 Hb_003206_110--Hb_006277_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.30436 4.92453 5.09728 15.1318 4.78917 8.98869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.9438 4.18873 10.313 8.14243 17.663

CAGE analysis