Hb_004046_030

Information

Type -
Description -
Location Contig4046: 47119-58978
Sequence    

Annotation

kegg
ID atr:s00048p00216790
description AMTR_s00048p00216790; hypothetical protein
nr
ID XP_012070258.1
description PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
swissprot
ID Q9XIP7
description GPCR-type G protein 1 OS=Arabidopsis thaliana GN=GTG1 PE=1 SV=1
trembl
ID A0A067KX23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02568 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004046_030 0.0 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
2 Hb_003206_110 0.0517741641 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
3 Hb_006277_010 0.0720132978 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
4 Hb_170138_010 0.0778877091 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000185_220 0.0844008241 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
6 Hb_000800_090 0.0879134173 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
7 Hb_012678_020 0.0920581083 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
8 Hb_001080_300 0.0940333014 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
9 Hb_000946_110 0.0945903817 - - GTP cyclohydrolase I, putative [Ricinus communis]
10 Hb_005218_020 0.0967547572 - - Uncharacterized protein isoform 3 [Theobroma cacao]
11 Hb_002804_040 0.0972841082 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
12 Hb_000309_050 0.0974379699 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
13 Hb_007383_020 0.0985237437 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001195_400 0.1000633915 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
15 Hb_000297_120 0.1012937393 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
16 Hb_002928_090 0.1027716975 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
17 Hb_000525_090 0.1035508551 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
18 Hb_066842_010 0.1041523915 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
19 Hb_000237_040 0.1062234403 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
20 Hb_007416_210 0.1062747425 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]

Gene co-expression network

sample Hb_004046_030 Hb_004046_030 Hb_003206_110 Hb_003206_110 Hb_004046_030--Hb_003206_110 Hb_006277_010 Hb_006277_010 Hb_004046_030--Hb_006277_010 Hb_170138_010 Hb_170138_010 Hb_004046_030--Hb_170138_010 Hb_000185_220 Hb_000185_220 Hb_004046_030--Hb_000185_220 Hb_000800_090 Hb_000800_090 Hb_004046_030--Hb_000800_090 Hb_012678_020 Hb_012678_020 Hb_004046_030--Hb_012678_020 Hb_003206_110--Hb_170138_010 Hb_003206_110--Hb_000185_220 Hb_001195_400 Hb_001195_400 Hb_003206_110--Hb_001195_400 Hb_000359_210 Hb_000359_210 Hb_003206_110--Hb_000359_210 Hb_003206_110--Hb_006277_010 Hb_006277_010--Hb_170138_010 Hb_000950_010 Hb_000950_010 Hb_006277_010--Hb_000950_010 Hb_006277_010--Hb_000185_220 Hb_005601_040 Hb_005601_040 Hb_006277_010--Hb_005601_040 Hb_170138_010--Hb_001195_400 Hb_170138_010--Hb_000185_220 Hb_170138_010--Hb_000359_210 Hb_000684_210 Hb_000684_210 Hb_170138_010--Hb_000684_210 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_000185_220--Hb_001195_400 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_005701_120 Hb_005701_120 Hb_000800_090--Hb_005701_120 Hb_000025_190 Hb_000025_190 Hb_000800_090--Hb_000025_190 Hb_001946_310 Hb_001946_310 Hb_000800_090--Hb_001946_310 Hb_000800_090--Hb_000185_220 Hb_005648_010 Hb_005648_010 Hb_000800_090--Hb_005648_010 Hb_007558_100 Hb_007558_100 Hb_012678_020--Hb_007558_100 Hb_002093_060 Hb_002093_060 Hb_012678_020--Hb_002093_060 Hb_007383_020 Hb_007383_020 Hb_012678_020--Hb_007383_020 Hb_012678_020--Hb_000800_090 Hb_012678_020--Hb_003206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10522 1.00764 1.63687 4.49049 0.875811 1.85914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93412 1.36569 2.17759 3.24723 4.19462

CAGE analysis