Hb_002093_060

Information

Type -
Description -
Location Contig2093: 133243-146276
Sequence    

Annotation

kegg
ID rcu:RCOM_0114250
description phosphoprotein phosphatase, putative
nr
ID XP_002532919.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID G4LTX4
description Phosphoglucan phosphatase DSP4, amyloplastic OS=Castanea sativa GN=DSP4 PE=1 SV=1
trembl
ID B9T3V0
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_0114250 PE=4 SV=1
Gene Ontology
ID GO:0009536
description phosphoglucan phosphatase amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21657: 133314-146110 , PASA_asmbl_21658: 133314-144800
cDNA
(Sanger)
(ID:Location)		 027_H12.ab1: 141838-146110

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002093_060 0.0 - - phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_005648_010 0.0588432779 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
3 Hb_002301_100 0.0797086409 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
4 Hb_000120_370 0.0807684043 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
5 Hb_001957_010 0.0838627755 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
6 Hb_000115_150 0.0845515787 - - PREDICTED: IST1 homolog [Jatropha curcas]
7 Hb_012678_020 0.0859458608 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
8 Hb_003988_050 0.0861015171 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
9 Hb_012733_040 0.0897559151 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
10 Hb_002686_200 0.0909271236 - - glucosidase II beta subunit, putative [Ricinus communis]
11 Hb_001242_120 0.0919304829 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
12 Hb_005725_130 0.0936947515 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
13 Hb_001493_150 0.0937842646 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
14 Hb_003159_050 0.0971506701 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000197_190 0.0978059984 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
16 Hb_000768_160 0.0989226957 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
17 Hb_000221_240 0.1012154878 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
18 Hb_000703_330 0.1018590814 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002357_060 0.1023923191 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
20 Hb_009615_060 0.1025808917 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002093_060 Hb_002093_060 Hb_005648_010 Hb_005648_010 Hb_002093_060--Hb_005648_010 Hb_002301_100 Hb_002301_100 Hb_002093_060--Hb_002301_100 Hb_000120_370 Hb_000120_370 Hb_002093_060--Hb_000120_370 Hb_001957_010 Hb_001957_010 Hb_002093_060--Hb_001957_010 Hb_000115_150 Hb_000115_150 Hb_002093_060--Hb_000115_150 Hb_012678_020 Hb_012678_020 Hb_002093_060--Hb_012678_020 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_004880_150 Hb_004880_150 Hb_005648_010--Hb_004880_150 Hb_005648_010--Hb_000115_150 Hb_000025_190 Hb_000025_190 Hb_005648_010--Hb_000025_190 Hb_005648_010--Hb_000120_370 Hb_000398_060 Hb_000398_060 Hb_002301_100--Hb_000398_060 Hb_012733_040 Hb_012733_040 Hb_002301_100--Hb_012733_040 Hb_001828_180 Hb_001828_180 Hb_002301_100--Hb_001828_180 Hb_000363_190 Hb_000363_190 Hb_002301_100--Hb_000363_190 Hb_001242_120 Hb_001242_120 Hb_002301_100--Hb_001242_120 Hb_001493_150 Hb_001493_150 Hb_002301_100--Hb_001493_150 Hb_000120_370--Hb_000115_150 Hb_005725_130 Hb_005725_130 Hb_000120_370--Hb_005725_130 Hb_000120_370--Hb_001828_180 Hb_000120_370--Hb_002301_100 Hb_000167_010 Hb_000167_010 Hb_000120_370--Hb_000167_010 Hb_065968_010 Hb_065968_010 Hb_001957_010--Hb_065968_010 Hb_003605_020 Hb_003605_020 Hb_001957_010--Hb_003605_020 Hb_000197_190 Hb_000197_190 Hb_001957_010--Hb_000197_190 Hb_001507_120 Hb_001507_120 Hb_001957_010--Hb_001507_120 Hb_000395_280 Hb_000395_280 Hb_001957_010--Hb_000395_280 Hb_003994_030 Hb_003994_030 Hb_001957_010--Hb_003994_030 Hb_003988_050 Hb_003988_050 Hb_000115_150--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000115_150--Hb_062537_010 Hb_001104_100 Hb_001104_100 Hb_000115_150--Hb_001104_100 Hb_000115_150--Hb_000025_190 Hb_007558_100 Hb_007558_100 Hb_012678_020--Hb_007558_100 Hb_007383_020 Hb_007383_020 Hb_012678_020--Hb_007383_020 Hb_004046_030 Hb_004046_030 Hb_012678_020--Hb_004046_030 Hb_000800_090 Hb_000800_090 Hb_012678_020--Hb_000800_090 Hb_003206_110 Hb_003206_110 Hb_012678_020--Hb_003206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.49516 5.6001 11.2825 22.1754 6.15389 7.24429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3677 8.54216 6.71318 22.8076 16.3365

CAGE analysis