Hb_005601_040

Information

Type -
Description -
Location Contig5601: 57431-70268
Sequence    

Annotation

kegg
ID tcc:TCM_007621
description Histone deacetylase 1 isoform 1
nr
ID XP_007043130.1
description Histone deacetylase 1 isoform 1 [Theobroma cacao]
swissprot
ID O22446
description Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
trembl
ID A0A061E3N0
description Histone deacetylase OS=Theobroma cacao GN=TCM_007621 PE=3 SV=1
Gene Ontology
ID GO:0032041
description histone deacetylase 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48759: 57437-70060
cDNA
(Sanger)
(ID:Location)		 008_H08.ab1: 69146-70059

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005601_040 0.0 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
2 Hb_001629_030 0.0593766486 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
3 Hb_001195_400 0.0702886402 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
4 Hb_001818_100 0.0712849007 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_005976_080 0.0778280381 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
6 Hb_000185_220 0.0795715518 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
7 Hb_003305_040 0.0804240679 - - AP47/50p mRNA family protein [Populus trichocarpa]
8 Hb_012393_030 0.0813114467 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
9 Hb_002392_010 0.0822643081 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
10 Hb_007533_040 0.0836182795 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_000080_130 0.0857486802 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
12 Hb_004108_160 0.0869506591 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
13 Hb_170138_010 0.0889046217 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003025_100 0.0900713249 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
15 Hb_006059_010 0.0916480524 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
16 Hb_000841_050 0.0916793656 - - hypothetical protein L484_019972 [Morus notabilis]
17 Hb_004159_020 0.0916874692 - - Putative dihydrodipicolinate reductase 2, chloroplastic [Aegilops tauschii]
18 Hb_006059_030 0.0917622483 - - glutamate dehydrogenase, putative [Ricinus communis]
19 Hb_001541_120 0.0920148636 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
20 Hb_002748_020 0.0922984559 - - transducin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005601_040 Hb_005601_040 Hb_001629_030 Hb_001629_030 Hb_005601_040--Hb_001629_030 Hb_001195_400 Hb_001195_400 Hb_005601_040--Hb_001195_400 Hb_001818_100 Hb_001818_100 Hb_005601_040--Hb_001818_100 Hb_005976_080 Hb_005976_080 Hb_005601_040--Hb_005976_080 Hb_000185_220 Hb_000185_220 Hb_005601_040--Hb_000185_220 Hb_003305_040 Hb_003305_040 Hb_005601_040--Hb_003305_040 Hb_001629_030--Hb_001818_100 Hb_004108_160 Hb_004108_160 Hb_001629_030--Hb_004108_160 Hb_000656_010 Hb_000656_010 Hb_001629_030--Hb_000656_010 Hb_004052_170 Hb_004052_170 Hb_001629_030--Hb_004052_170 Hb_003153_010 Hb_003153_010 Hb_001629_030--Hb_003153_010 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110 Hb_003025_100 Hb_003025_100 Hb_001818_100--Hb_003025_100 Hb_001818_100--Hb_004052_170 Hb_001818_100--Hb_004108_160 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200 Hb_015675_040 Hb_015675_040 Hb_005976_080--Hb_015675_040 Hb_004159_020 Hb_004159_020 Hb_005976_080--Hb_004159_020 Hb_005976_080--Hb_000656_010 Hb_003878_150 Hb_003878_150 Hb_005976_080--Hb_003878_150 Hb_027073_020 Hb_027073_020 Hb_005976_080--Hb_027073_020 Hb_005976_080--Hb_001195_400 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_000060_050 Hb_000060_050 Hb_003305_040--Hb_000060_050 Hb_000252_100 Hb_000252_100 Hb_003305_040--Hb_000252_100 Hb_002110_100 Hb_002110_100 Hb_003305_040--Hb_002110_100 Hb_000454_090 Hb_000454_090 Hb_003305_040--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_003305_040--Hb_000173_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7937 18.9407 40.3265 49.3314 18.6717 24.0282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.618 32.4038 50.553 42.9087 55.1412

CAGE analysis