Hb_004052_170

Information

Type -
Description -
Location Contig4052: 180224-181171
Sequence    

Annotation

kegg
ID tcc:TCM_014302
description Pentatricopeptide repeat-containing protein, putative
nr
ID XP_012080409.1
description PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
swissprot
ID Q9FME4
description Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis thaliana GN=PNM1 PE=1 SV=1
trembl
ID A0A067K568
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11747 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_170 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
2 Hb_001818_100 0.0665701117 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
3 Hb_000556_090 0.0685622468 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
4 Hb_001629_030 0.0709783456 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
5 Hb_001157_240 0.0739738111 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
6 Hb_000340_230 0.0753048149 - - synapse-associated protein, putative [Ricinus communis]
7 Hb_029510_050 0.0847685135 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
8 Hb_001357_020 0.0862359512 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
9 Hb_005650_010 0.0873426688 - - ATP binding protein, putative [Ricinus communis]
10 Hb_004108_160 0.0908935454 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
11 Hb_000805_100 0.0918931949 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_003153_010 0.0926243848 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
13 Hb_003943_110 0.0936646645 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
14 Hb_000189_550 0.0939079831 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
15 Hb_011228_010 0.0945493031 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_003025_100 0.0946862277 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
17 Hb_029879_070 0.0947714823 - - PREDICTED: phospholipase A I [Jatropha curcas]
18 Hb_027073_020 0.0954325181 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
19 Hb_000011_060 0.0956438567 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
20 Hb_004712_130 0.0959848107 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]

Gene co-expression network

sample Hb_004052_170 Hb_004052_170 Hb_001818_100 Hb_001818_100 Hb_004052_170--Hb_001818_100 Hb_000556_090 Hb_000556_090 Hb_004052_170--Hb_000556_090 Hb_001629_030 Hb_001629_030 Hb_004052_170--Hb_001629_030 Hb_001157_240 Hb_001157_240 Hb_004052_170--Hb_001157_240 Hb_000340_230 Hb_000340_230 Hb_004052_170--Hb_000340_230 Hb_029510_050 Hb_029510_050 Hb_004052_170--Hb_029510_050 Hb_001818_100--Hb_001629_030 Hb_003025_100 Hb_003025_100 Hb_001818_100--Hb_003025_100 Hb_004108_160 Hb_004108_160 Hb_001818_100--Hb_004108_160 Hb_005601_040 Hb_005601_040 Hb_001818_100--Hb_005601_040 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200 Hb_000556_090--Hb_004108_160 Hb_003153_010 Hb_003153_010 Hb_000556_090--Hb_003153_010 Hb_011228_010 Hb_011228_010 Hb_000556_090--Hb_011228_010 Hb_000556_090--Hb_001818_100 Hb_000556_090--Hb_000340_230 Hb_001629_030--Hb_005601_040 Hb_001629_030--Hb_004108_160 Hb_000656_010 Hb_000656_010 Hb_001629_030--Hb_000656_010 Hb_001629_030--Hb_003153_010 Hb_001999_290 Hb_001999_290 Hb_001157_240--Hb_001999_290 Hb_003943_110 Hb_003943_110 Hb_001157_240--Hb_003943_110 Hb_005736_020 Hb_005736_020 Hb_001157_240--Hb_005736_020 Hb_005582_040 Hb_005582_040 Hb_001157_240--Hb_005582_040 Hb_000640_040 Hb_000640_040 Hb_001157_240--Hb_000640_040 Hb_001008_120 Hb_001008_120 Hb_001157_240--Hb_001008_120 Hb_001163_100 Hb_001163_100 Hb_000340_230--Hb_001163_100 Hb_000913_020 Hb_000913_020 Hb_000340_230--Hb_000913_020 Hb_000340_230--Hb_029510_050 Hb_002495_080 Hb_002495_080 Hb_000340_230--Hb_002495_080 Hb_005686_090 Hb_005686_090 Hb_000340_230--Hb_005686_090 Hb_000254_090 Hb_000254_090 Hb_029510_050--Hb_000254_090 Hb_029879_070 Hb_029879_070 Hb_029510_050--Hb_029879_070 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_029510_050--Hb_005686_090 Hb_002685_210 Hb_002685_210 Hb_029510_050--Hb_002685_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1246 16.8728 18.8925 30.3658 18.452 17.5201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8909 22.2873 34.2302 30.5969 45.8473

CAGE analysis