Hb_001008_120

Information

Type desease resistance
Description Gene Name: PEX-1N
Location Contig1008: 114337-127537
Sequence    

Annotation

kegg
ID rcu:RCOM_0897760
description peroxisome biogenesis factor, putative (EC:3.6.4.3)
nr
ID XP_002517570.1
description peroxisome biogenesis factor, putative [Ricinus communis]
swissprot
ID Q9FNP1
description Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=2
trembl
ID B9RV01
description Peroxisome biogenesis factor, putative OS=Ricinus communis GN=RCOM_0897760 PE=3 SV=1
Gene Ontology
ID GO:0005778
description peroxisome biogenesis protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00491: 114508-114938 , PASA_asmbl_00492: 115243-117537 , PASA_asmbl_00494: 118595-122842 , PASA_asmbl_00495: 123106-125132 , PASA_asmbl_00496: 126133-127188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_120 0.0 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
2 Hb_028912_050 0.0622925783 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
3 Hb_005736_020 0.063766945 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
4 Hb_002263_020 0.0645536259 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_001157_240 0.0668069676 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
6 Hb_000720_050 0.0679476295 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
7 Hb_005686_090 0.0684969752 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
8 Hb_001357_020 0.0687088773 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
9 Hb_000792_010 0.0689914796 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
10 Hb_001004_060 0.069209263 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
11 Hb_005253_030 0.0698034104 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001417_030 0.070011986 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
13 Hb_001014_160 0.0738883072 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
14 Hb_000329_710 0.0744671508 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
15 Hb_007645_100 0.0744822536 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
16 Hb_000053_040 0.0748887275 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
17 Hb_007426_110 0.0749479921 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
18 Hb_003020_030 0.0751024052 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
19 Hb_000261_060 0.075889146 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
20 Hb_002518_260 0.0761997455 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]

Gene co-expression network

sample Hb_001008_120 Hb_001008_120 Hb_028912_050 Hb_028912_050 Hb_001008_120--Hb_028912_050 Hb_005736_020 Hb_005736_020 Hb_001008_120--Hb_005736_020 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001157_240 Hb_001157_240 Hb_001008_120--Hb_001157_240 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_005686_090 Hb_005686_090 Hb_001008_120--Hb_005686_090 Hb_004225_050 Hb_004225_050 Hb_028912_050--Hb_004225_050 Hb_010710_070 Hb_010710_070 Hb_028912_050--Hb_010710_070 Hb_188063_020 Hb_188063_020 Hb_028912_050--Hb_188063_020 Hb_000028_480 Hb_000028_480 Hb_028912_050--Hb_000028_480 Hb_004963_030 Hb_004963_030 Hb_028912_050--Hb_004963_030 Hb_005736_020--Hb_005686_090 Hb_005736_020--Hb_001157_240 Hb_001999_290 Hb_001999_290 Hb_005736_020--Hb_001999_290 Hb_001004_060 Hb_001004_060 Hb_005736_020--Hb_001004_060 Hb_000204_120 Hb_000204_120 Hb_005736_020--Hb_000204_120 Hb_000138_100 Hb_000138_100 Hb_002263_020--Hb_000138_100 Hb_001902_030 Hb_001902_030 Hb_002263_020--Hb_001902_030 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_003517_040 Hb_003517_040 Hb_002263_020--Hb_003517_040 Hb_004109_080 Hb_004109_080 Hb_002263_020--Hb_004109_080 Hb_001157_240--Hb_001999_290 Hb_003943_110 Hb_003943_110 Hb_001157_240--Hb_003943_110 Hb_005582_040 Hb_005582_040 Hb_001157_240--Hb_005582_040 Hb_000640_040 Hb_000640_040 Hb_001157_240--Hb_000640_040 Hb_001789_110 Hb_001789_110 Hb_000720_050--Hb_001789_110 Hb_188281_040 Hb_188281_040 Hb_000720_050--Hb_188281_040 Hb_000441_090 Hb_000441_090 Hb_000720_050--Hb_000441_090 Hb_001936_090 Hb_001936_090 Hb_000720_050--Hb_001936_090 Hb_000789_200 Hb_000789_200 Hb_000720_050--Hb_000789_200 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_002518_260 Hb_002518_260 Hb_005686_090--Hb_002518_260 Hb_029510_050 Hb_029510_050 Hb_005686_090--Hb_029510_050 Hb_005686_090--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42143 3.61797 2.58398 2.96832 3.71922 4.33091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.21297 3.86117 3.696 4.51332 6.78146

CAGE analysis