Hb_188063_020

Information

Type -
Description -
Location Contig188063: 12448-18993
Sequence    

Annotation

kegg
ID rcu:RCOM_1469440
description hypothetical protein
nr
ID XP_002514639.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O94336
description Uncharacterized FCP1 homology domain-containing protein C1271.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.03c PE=3 SV=1
trembl
ID B9RLM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18557: 12470-13822 , PASA_asmbl_18558: 15306-18780
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188063_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004225_050 0.0536662383 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
3 Hb_002849_100 0.0569104066 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
4 Hb_028912_050 0.0569247239 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
5 Hb_010710_070 0.0569727501 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
6 Hb_004963_030 0.0584289465 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_009548_020 0.0597467665 - - structural constituent of cell wall, putative [Ricinus communis]
8 Hb_001141_020 0.0610843294 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
9 Hb_000343_250 0.0623358213 - - PREDICTED: protein CASC3 [Jatropha curcas]
10 Hb_172632_080 0.0669454905 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
11 Hb_000028_480 0.0697133585 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
12 Hb_002263_020 0.0708884431 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
13 Hb_000029_050 0.0725208054 - - expressed protein, putative [Ricinus communis]
14 Hb_007657_010 0.0750612815 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001198_100 0.0758228303 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
16 Hb_001329_140 0.0758248847 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
17 Hb_030736_100 0.0758340854 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001004_060 0.0763886249 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
19 Hb_001014_160 0.0768135278 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
20 Hb_004619_030 0.0774155063 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_188063_020 Hb_188063_020 Hb_004225_050 Hb_004225_050 Hb_188063_020--Hb_004225_050 Hb_002849_100 Hb_002849_100 Hb_188063_020--Hb_002849_100 Hb_028912_050 Hb_028912_050 Hb_188063_020--Hb_028912_050 Hb_010710_070 Hb_010710_070 Hb_188063_020--Hb_010710_070 Hb_004963_030 Hb_004963_030 Hb_188063_020--Hb_004963_030 Hb_009548_020 Hb_009548_020 Hb_188063_020--Hb_009548_020 Hb_004225_050--Hb_028912_050 Hb_006649_050 Hb_006649_050 Hb_004225_050--Hb_006649_050 Hb_000028_480 Hb_000028_480 Hb_004225_050--Hb_000028_480 Hb_004225_050--Hb_002849_100 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060 Hb_002849_100--Hb_010710_070 Hb_002849_100--Hb_004963_030 Hb_000343_250 Hb_000343_250 Hb_002849_100--Hb_000343_250 Hb_002496_010 Hb_002496_010 Hb_002849_100--Hb_002496_010 Hb_028912_050--Hb_010710_070 Hb_028912_050--Hb_000028_480 Hb_028912_050--Hb_004963_030 Hb_001008_120 Hb_001008_120 Hb_028912_050--Hb_001008_120 Hb_010710_070--Hb_004963_030 Hb_004994_380 Hb_004994_380 Hb_010710_070--Hb_004994_380 Hb_001442_040 Hb_001442_040 Hb_010710_070--Hb_001442_040 Hb_004963_030--Hb_001442_040 Hb_001014_160 Hb_001014_160 Hb_004963_030--Hb_001014_160 Hb_004963_030--Hb_000343_250 Hb_002835_370 Hb_002835_370 Hb_009548_020--Hb_002835_370 Hb_000072_220 Hb_000072_220 Hb_009548_020--Hb_000072_220 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_012022_090 Hb_012022_090 Hb_009548_020--Hb_012022_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83031 3.63969 3.73256 3.53677 4.95156 6.29562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.47478 3.89264 5.80105 4.46146 6.36164

CAGE analysis