Hb_000640_040

Information

Type -
Description -
Location Contig640: 21381-37397
Sequence    

Annotation

kegg
ID vvi:100248563
description bromodomain and WD repeat-containing protein 3
nr
ID XP_012082886.1
description PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q8WWQ0
description PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2
trembl
ID A0A067JZR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14024 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52070: 21538-24573 , PASA_asmbl_52072: 24917-35077
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_040 0.0 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
2 Hb_001716_040 0.0433435194 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
3 Hb_002542_110 0.0510738465 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
4 Hb_005582_040 0.0534453749 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
5 Hb_001157_240 0.0613518754 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
6 Hb_010068_080 0.0614863927 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
7 Hb_001304_110 0.0636812315 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
8 Hb_002686_090 0.0639075702 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
9 Hb_001999_290 0.0669250232 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
10 Hb_002830_010 0.0669469905 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
11 Hb_008948_020 0.0678020868 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
12 Hb_007441_160 0.0698371532 - - RNA binding protein, putative [Ricinus communis]
13 Hb_001635_120 0.0699953085 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
14 Hb_004435_030 0.0701535101 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
15 Hb_001377_190 0.0732795014 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
16 Hb_003943_110 0.0750833931 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
17 Hb_008033_040 0.0756161357 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
18 Hb_001478_010 0.0760412058 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
19 Hb_006913_020 0.0761649221 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
20 Hb_005736_020 0.0773223536 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]

Gene co-expression network

sample Hb_000640_040 Hb_000640_040 Hb_001716_040 Hb_001716_040 Hb_000640_040--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_000640_040--Hb_002542_110 Hb_005582_040 Hb_005582_040 Hb_000640_040--Hb_005582_040 Hb_001157_240 Hb_001157_240 Hb_000640_040--Hb_001157_240 Hb_010068_080 Hb_010068_080 Hb_000640_040--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_000640_040--Hb_001304_110 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_002542_110--Hb_010068_080 Hb_002542_110--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_002542_110--Hb_002686_090 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_005582_040--Hb_001304_110 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_001635_120 Hb_001635_120 Hb_005582_040--Hb_001635_120 Hb_001999_290 Hb_001999_290 Hb_001157_240--Hb_001999_290 Hb_001157_240--Hb_003943_110 Hb_005736_020 Hb_005736_020 Hb_001157_240--Hb_005736_020 Hb_001157_240--Hb_005582_040 Hb_001008_120 Hb_001008_120 Hb_001157_240--Hb_001008_120 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_010068_080--Hb_001304_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060 Hb_005686_090 Hb_005686_090 Hb_001304_110--Hb_005686_090 Hb_001304_110--Hb_001999_290 Hb_011386_010 Hb_011386_010 Hb_001304_110--Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_001304_110--Hb_005054_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72731 7.30024 4.93113 4.84475 3.35125 4.21344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.61937 4.86782 5.9722 6.29427 9.10406

CAGE analysis