Hb_002686_090

Information

Type -
Description -
Location Contig2686: 51162-54625
Sequence    

Annotation

kegg
ID vvi:100246875
description pentatricopeptide repeat-containing protein At4g13650
nr
ID XP_012067069.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
swissprot
ID Q9SVP7
description Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
trembl
ID F6HLA9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07510 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at4g13650

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27997: 50090-50732
cDNA
(Sanger)
(ID:Location)		 006_A03.ab1: 50090-50732

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
2 Hb_000640_040 0.0639075702 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
3 Hb_001865_070 0.0654555002 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
4 Hb_000204_120 0.0692407027 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
5 Hb_001716_040 0.0703138393 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
6 Hb_002542_110 0.0738168629 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
7 Hb_000170_130 0.0744198169 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
8 Hb_001478_010 0.0745102346 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
9 Hb_000635_060 0.0749982651 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
10 Hb_012506_040 0.0751726303 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
11 Hb_000482_040 0.0754005412 - - Protein YME1, putative [Ricinus communis]
12 Hb_000504_180 0.0756347012 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_001951_220 0.0806822416 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
14 Hb_011671_410 0.0817842597 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
15 Hb_000465_280 0.0826529871 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
16 Hb_005977_070 0.0833671965 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
17 Hb_005582_040 0.0835183591 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
18 Hb_001157_240 0.086576162 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
19 Hb_009658_030 0.0884308794 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
20 Hb_007441_160 0.0887392224 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002686_090 Hb_002686_090 Hb_000640_040 Hb_000640_040 Hb_002686_090--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_002686_090--Hb_001865_070 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_001716_040 Hb_001716_040 Hb_002686_090--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_002686_090--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_002686_090--Hb_000170_130 Hb_000640_040--Hb_001716_040 Hb_000640_040--Hb_002542_110 Hb_005582_040 Hb_005582_040 Hb_000640_040--Hb_005582_040 Hb_001157_240 Hb_001157_240 Hb_000640_040--Hb_001157_240 Hb_010068_080 Hb_010068_080 Hb_000640_040--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_000640_040--Hb_001304_110 Hb_007441_160 Hb_007441_160 Hb_001865_070--Hb_007441_160 Hb_005977_070 Hb_005977_070 Hb_001865_070--Hb_005977_070 Hb_000672_040 Hb_000672_040 Hb_001865_070--Hb_000672_040 Hb_005736_020 Hb_005736_020 Hb_001865_070--Hb_005736_020 Hb_001865_070--Hb_001157_240 Hb_000204_120--Hb_005736_020 Hb_011671_410 Hb_011671_410 Hb_000204_120--Hb_011671_410 Hb_000204_120--Hb_001865_070 Hb_000388_090 Hb_000388_090 Hb_000204_120--Hb_000388_090 Hb_000204_120--Hb_000672_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_002542_110--Hb_010068_080 Hb_002542_110--Hb_001716_040 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180 Hb_000170_130--Hb_011671_410 Hb_012506_040 Hb_012506_040 Hb_000170_130--Hb_012506_040 Hb_000170_130--Hb_002542_110 Hb_006816_370 Hb_006816_370 Hb_000170_130--Hb_006816_370 Hb_062226_070 Hb_062226_070 Hb_000170_130--Hb_062226_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.46321 1.03673 0.551694 0.734659 0.348688 0.591794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.541811 0.618238 0.97976 0.866373 1.57103

CAGE analysis