Hb_000388_090

Information

Type -
Description -
Location Contig388: 139056-140576
Sequence    

Annotation

kegg
ID rcu:RCOM_0285220
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012077781.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9FVX2
description Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2
trembl
ID A0A067KAI0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13422 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000388_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
2 Hb_001357_020 0.0653312299 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
3 Hb_005736_020 0.065423552 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
4 Hb_002063_020 0.0663455449 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
5 Hb_028912_050 0.0725059272 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
6 Hb_002099_080 0.0730379168 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
7 Hb_000028_390 0.0733636157 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
8 Hb_001157_240 0.0737922772 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
9 Hb_002055_040 0.075210663 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
10 Hb_001008_120 0.0763370587 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
11 Hb_000366_040 0.0768221295 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_003168_110 0.0772146123 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
13 Hb_002600_150 0.0774990658 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
14 Hb_009296_040 0.0776146991 - - hypothetical protein L484_007435 [Morus notabilis]
15 Hb_019337_020 0.0782046807 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
16 Hb_005686_090 0.0798966635 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
17 Hb_004712_130 0.0805251095 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
18 Hb_001227_080 0.0820955963 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001417_030 0.0823450436 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
20 Hb_001004_060 0.0828875154 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000388_090 Hb_000388_090 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_005736_020 Hb_005736_020 Hb_000388_090--Hb_005736_020 Hb_002063_020 Hb_002063_020 Hb_000388_090--Hb_002063_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_002099_080 Hb_002099_080 Hb_000388_090--Hb_002099_080 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390 Hb_002600_150 Hb_002600_150 Hb_001357_020--Hb_002600_150 Hb_002518_260 Hb_002518_260 Hb_001357_020--Hb_002518_260 Hb_029510_050 Hb_029510_050 Hb_001357_020--Hb_029510_050 Hb_000976_300 Hb_000976_300 Hb_001357_020--Hb_000976_300 Hb_001008_120 Hb_001008_120 Hb_001357_020--Hb_001008_120 Hb_005686_090 Hb_005686_090 Hb_005736_020--Hb_005686_090 Hb_001157_240 Hb_001157_240 Hb_005736_020--Hb_001157_240 Hb_001999_290 Hb_001999_290 Hb_005736_020--Hb_001999_290 Hb_001004_060 Hb_001004_060 Hb_005736_020--Hb_001004_060 Hb_005736_020--Hb_001008_120 Hb_000204_120 Hb_000204_120 Hb_005736_020--Hb_000204_120 Hb_003253_040 Hb_003253_040 Hb_002063_020--Hb_003253_040 Hb_000366_040 Hb_000366_040 Hb_002063_020--Hb_000366_040 Hb_002063_020--Hb_002099_080 Hb_002942_100 Hb_002942_100 Hb_002063_020--Hb_002942_100 Hb_000352_190 Hb_000352_190 Hb_002063_020--Hb_000352_190 Hb_004225_050 Hb_004225_050 Hb_028912_050--Hb_004225_050 Hb_010710_070 Hb_010710_070 Hb_028912_050--Hb_010710_070 Hb_188063_020 Hb_188063_020 Hb_028912_050--Hb_188063_020 Hb_000028_480 Hb_000028_480 Hb_028912_050--Hb_000028_480 Hb_004963_030 Hb_004963_030 Hb_028912_050--Hb_004963_030 Hb_028912_050--Hb_001008_120 Hb_007820_010 Hb_007820_010 Hb_002099_080--Hb_007820_010 Hb_002055_040 Hb_002055_040 Hb_002099_080--Hb_002055_040 Hb_002667_050 Hb_002667_050 Hb_002099_080--Hb_002667_050 Hb_009296_040 Hb_009296_040 Hb_002099_080--Hb_009296_040 Hb_000028_390--Hb_009296_040 Hb_001876_010 Hb_001876_010 Hb_000028_390--Hb_001876_010 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_004449_080 Hb_004449_080 Hb_000028_390--Hb_004449_080 Hb_000140_210 Hb_000140_210 Hb_000028_390--Hb_000140_210 Hb_000011_060 Hb_000011_060 Hb_000028_390--Hb_000011_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.27264 8.41916 5.45706 7.5832 6.49481 11.1687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.91507 7.18122 12.8174 11.8207 14.4754

CAGE analysis