Hb_001876_010

Information

Type -
Description -
Location Contig1876: 5500-10042
Sequence    

Annotation

kegg
ID rcu:RCOM_0593160
description Arginyl-tRNA--protein transferase, putative (EC:2.3.2.8)
nr
ID XP_012087606.1
description PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9ZT48
description Arginyl-tRNA--protein transferase 1 OS=Arabidopsis thaliana GN=ATE1 PE=2 SV=2
trembl
ID A0A067LC52
description Arginyl-tRNA--protein transferase OS=Jatropha curcas GN=JCGZ_01283 PE=3 SV=1
Gene Ontology
ID GO:0004057
description arginyl-trna--protein transferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18495: 5621-8585 , PASA_asmbl_18496: 9003-10057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001876_010 0.0 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
2 Hb_000011_060 0.0513445058 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
3 Hb_002908_050 0.0517136712 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
4 Hb_000189_550 0.0585651961 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
5 Hb_000069_210 0.0608271479 - - PREDICTED: exportin-2 [Jatropha curcas]
6 Hb_000028_390 0.0626473423 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
7 Hb_000984_170 0.0633739265 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
8 Hb_002768_060 0.0637067632 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
9 Hb_000656_010 0.0661522809 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
10 Hb_001440_030 0.068356153 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
11 Hb_019616_020 0.069542885 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
12 Hb_003544_160 0.0702644376 - - -
13 Hb_009296_040 0.0704956305 - - hypothetical protein L484_007435 [Morus notabilis]
14 Hb_000872_010 0.0720581186 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
15 Hb_000053_040 0.0723083621 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
16 Hb_013726_090 0.0727515929 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
17 Hb_004480_100 0.0742962622 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
18 Hb_001789_150 0.0748130394 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
19 Hb_010515_020 0.0748146029 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
20 Hb_004679_030 0.0755377611 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]

Gene co-expression network

sample Hb_001876_010 Hb_001876_010 Hb_000011_060 Hb_000011_060 Hb_001876_010--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_001876_010--Hb_002908_050 Hb_000189_550 Hb_000189_550 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000028_390 Hb_000028_390 Hb_001876_010--Hb_000028_390 Hb_000984_170 Hb_000984_170 Hb_001876_010--Hb_000984_170 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000614_240 Hb_000614_240 Hb_000011_060--Hb_000614_240 Hb_000011_060--Hb_000984_170 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020 Hb_002908_050--Hb_000189_550 Hb_002908_050--Hb_000984_170 Hb_002908_050--Hb_000011_060 Hb_000363_040 Hb_000363_040 Hb_002908_050--Hb_000363_040 Hb_004480_100 Hb_004480_100 Hb_002908_050--Hb_004480_100 Hb_000189_550--Hb_001105_020 Hb_000189_550--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000189_550--Hb_000352_310 Hb_000656_010 Hb_000656_010 Hb_000189_550--Hb_000656_010 Hb_007416_090 Hb_007416_090 Hb_000069_210--Hb_007416_090 Hb_000095_080 Hb_000095_080 Hb_000069_210--Hb_000095_080 Hb_001789_150 Hb_001789_150 Hb_000069_210--Hb_001789_150 Hb_001936_130 Hb_001936_130 Hb_000069_210--Hb_001936_130 Hb_000094_210 Hb_000094_210 Hb_000069_210--Hb_000094_210 Hb_009296_040 Hb_009296_040 Hb_000028_390--Hb_009296_040 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_004449_080 Hb_004449_080 Hb_000028_390--Hb_004449_080 Hb_000140_210 Hb_000140_210 Hb_000028_390--Hb_000140_210 Hb_000028_390--Hb_000011_060 Hb_004677_050 Hb_004677_050 Hb_000984_170--Hb_004677_050 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_005663_110 Hb_005663_110 Hb_000984_170--Hb_005663_110 Hb_006452_120 Hb_006452_120 Hb_000984_170--Hb_006452_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.98685 4.17516 3.09705 6.75466 4.27724 5.07517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.00627 3.61863 5.95583 7.31093 7.48172

CAGE analysis