Hb_000352_310

Information

Type -
Description -
Location Contig352: 249242-259443
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa007694mg
description hypothetical protein
nr
ID KDO63454.1
description hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067F7S2
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0017891mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description importin-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36597: 249271-251860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_310 0.0 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
2 Hb_000011_060 0.0685526877 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
3 Hb_000189_550 0.0689848634 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
4 Hb_001876_050 0.0694860157 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
5 Hb_027073_020 0.0722508397 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
6 Hb_003465_030 0.0723072587 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001301_150 0.0726538848 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
8 Hb_000789_200 0.0727738545 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
9 Hb_000917_230 0.0732434149 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
10 Hb_000120_080 0.0734894774 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
11 Hb_001417_030 0.0744249522 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
12 Hb_001999_310 0.0755395385 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
13 Hb_000984_170 0.0757657626 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
14 Hb_000138_100 0.0760398302 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
15 Hb_002456_010 0.0784435334 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
16 Hb_001716_040 0.0797489257 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
17 Hb_005582_040 0.0797701083 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
18 Hb_000053_040 0.0799912235 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
19 Hb_001671_100 0.080006451 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
20 Hb_000708_030 0.0802147867 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_310 Hb_000352_310 Hb_000011_060 Hb_000011_060 Hb_000352_310--Hb_000011_060 Hb_000189_550 Hb_000189_550 Hb_000352_310--Hb_000189_550 Hb_001876_050 Hb_001876_050 Hb_000352_310--Hb_001876_050 Hb_027073_020 Hb_027073_020 Hb_000352_310--Hb_027073_020 Hb_003465_030 Hb_003465_030 Hb_000352_310--Hb_003465_030 Hb_001301_150 Hb_001301_150 Hb_000352_310--Hb_001301_150 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000614_240 Hb_000614_240 Hb_000011_060--Hb_000614_240 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020 Hb_000189_550--Hb_001876_010 Hb_002908_050 Hb_002908_050 Hb_000189_550--Hb_002908_050 Hb_000189_550--Hb_001105_020 Hb_000189_550--Hb_000011_060 Hb_000656_010 Hb_000656_010 Hb_000189_550--Hb_000656_010 Hb_007416_120 Hb_007416_120 Hb_001876_050--Hb_007416_120 Hb_001671_100 Hb_001671_100 Hb_001876_050--Hb_001671_100 Hb_004324_130 Hb_004324_130 Hb_001876_050--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_001876_050--Hb_001999_310 Hb_006831_140 Hb_006831_140 Hb_001876_050--Hb_006831_140 Hb_002456_010 Hb_002456_010 Hb_001876_050--Hb_002456_010 Hb_001789_110 Hb_001789_110 Hb_027073_020--Hb_001789_110 Hb_027073_020--Hb_001999_310 Hb_000789_200 Hb_000789_200 Hb_027073_020--Hb_000789_200 Hb_029243_030 Hb_029243_030 Hb_027073_020--Hb_029243_030 Hb_122968_010 Hb_122968_010 Hb_027073_020--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_027073_020--Hb_000406_200 Hb_001489_090 Hb_001489_090 Hb_003465_030--Hb_001489_090 Hb_000917_230 Hb_000917_230 Hb_003465_030--Hb_000917_230 Hb_003465_030--Hb_001671_100 Hb_000173_280 Hb_000173_280 Hb_003465_030--Hb_000173_280 Hb_003465_030--Hb_001876_050 Hb_003883_060 Hb_003883_060 Hb_001301_150--Hb_003883_060 Hb_000138_100 Hb_000138_100 Hb_001301_150--Hb_000138_100 Hb_004319_080 Hb_004319_080 Hb_001301_150--Hb_004319_080 Hb_001301_150--Hb_001876_050 Hb_000329_800 Hb_000329_800 Hb_001301_150--Hb_000329_800 Hb_183510_020 Hb_183510_020 Hb_001301_150--Hb_183510_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56929 5.27657 4.31906 5.45168 3.93743 3.86259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.38852 4.87745 5.30152 7.61035 7.56015

CAGE analysis