Hb_003465_030

Information

Type -
Description -
Location Contig3465: 39895-63755
Sequence    

Annotation

kegg
ID rcu:RCOM_1221680
description hypothetical protein
nr
ID XP_002519579.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0R0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1221680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36142: 40030-63739 , PASA_asmbl_36143: 43525-43712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003465_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001489_090 0.0397788865 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
3 Hb_000917_230 0.0719365714 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
4 Hb_000352_310 0.0723072587 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
5 Hb_001671_100 0.0736706016 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
6 Hb_000173_280 0.074906927 - - Speckle-type POZ protein, putative [Ricinus communis]
7 Hb_001876_050 0.075841449 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
8 Hb_007416_120 0.0769681865 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
9 Hb_001195_200 0.077102024 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
10 Hb_000948_160 0.0783902341 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
11 Hb_000078_120 0.078469933 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
12 Hb_006831_140 0.0797360743 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_005054_110 0.0801344544 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
14 Hb_004157_050 0.0817344249 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
15 Hb_006570_080 0.083183791 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
16 Hb_000347_240 0.0841728032 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
17 Hb_001301_110 0.0850731025 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
18 Hb_000460_030 0.0851268385 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
19 Hb_000181_400 0.0852884604 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
20 Hb_002078_350 0.0853343176 - - hypothetical protein B456_005G166600 [Gossypium raimondii]

Gene co-expression network

sample Hb_003465_030 Hb_003465_030 Hb_001489_090 Hb_001489_090 Hb_003465_030--Hb_001489_090 Hb_000917_230 Hb_000917_230 Hb_003465_030--Hb_000917_230 Hb_000352_310 Hb_000352_310 Hb_003465_030--Hb_000352_310 Hb_001671_100 Hb_001671_100 Hb_003465_030--Hb_001671_100 Hb_000173_280 Hb_000173_280 Hb_003465_030--Hb_000173_280 Hb_001876_050 Hb_001876_050 Hb_003465_030--Hb_001876_050 Hb_000347_240 Hb_000347_240 Hb_001489_090--Hb_000347_240 Hb_001195_200 Hb_001195_200 Hb_001489_090--Hb_001195_200 Hb_000948_160 Hb_000948_160 Hb_001489_090--Hb_000948_160 Hb_008453_030 Hb_008453_030 Hb_001489_090--Hb_008453_030 Hb_004586_420 Hb_004586_420 Hb_001489_090--Hb_004586_420 Hb_112198_010 Hb_112198_010 Hb_000917_230--Hb_112198_010 Hb_000078_120 Hb_000078_120 Hb_000917_230--Hb_000078_120 Hb_000856_010 Hb_000856_010 Hb_000917_230--Hb_000856_010 Hb_000521_240 Hb_000521_240 Hb_000917_230--Hb_000521_240 Hb_005054_110 Hb_005054_110 Hb_000917_230--Hb_005054_110 Hb_000011_060 Hb_000011_060 Hb_000352_310--Hb_000011_060 Hb_000189_550 Hb_000189_550 Hb_000352_310--Hb_000189_550 Hb_000352_310--Hb_001876_050 Hb_027073_020 Hb_027073_020 Hb_000352_310--Hb_027073_020 Hb_001301_150 Hb_001301_150 Hb_000352_310--Hb_001301_150 Hb_007416_120 Hb_007416_120 Hb_001671_100--Hb_007416_120 Hb_001671_100--Hb_001876_050 Hb_001999_310 Hb_001999_310 Hb_001671_100--Hb_001999_310 Hb_002232_360 Hb_002232_360 Hb_001671_100--Hb_002232_360 Hb_000392_430 Hb_000392_430 Hb_001671_100--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_001671_100--Hb_001314_050 Hb_001221_430 Hb_001221_430 Hb_000173_280--Hb_001221_430 Hb_001359_050 Hb_001359_050 Hb_000173_280--Hb_001359_050 Hb_164390_010 Hb_164390_010 Hb_000173_280--Hb_164390_010 Hb_006570_080 Hb_006570_080 Hb_000173_280--Hb_006570_080 Hb_000778_010 Hb_000778_010 Hb_000173_280--Hb_000778_010 Hb_005588_060 Hb_005588_060 Hb_000173_280--Hb_005588_060 Hb_001876_050--Hb_007416_120 Hb_004324_130 Hb_004324_130 Hb_001876_050--Hb_004324_130 Hb_001876_050--Hb_001999_310 Hb_006831_140 Hb_006831_140 Hb_001876_050--Hb_006831_140 Hb_002456_010 Hb_002456_010 Hb_001876_050--Hb_002456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.641 15.3271 12.3824 17.6227 14.8341 11.5704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7863 23.0052 16.0098 21.8854 19.2801

CAGE analysis