Hb_000984_170

Information

Type -
Description -
Location Contig984: 221207-229171
Sequence    

Annotation

kegg
ID rcu:RCOM_1584760
description Poly(rC)-binding protein, putative
nr
ID XP_012068119.1
description PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067KZE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15959 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64565: 228232-229142 , PASA_asmbl_64566: 221364-228184 , PASA_asmbl_64567: 221418-229145 , PASA_asmbl_64568: 221283-229145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_170 0.0 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
2 Hb_004677_050 0.0454573811 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
3 Hb_004030_080 0.0558882919 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
4 Hb_005663_110 0.0593182627 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
5 Hb_006452_120 0.0601907293 - - PREDICTED: protein FAM188A [Jatropha curcas]
6 Hb_000011_060 0.0606813588 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
7 Hb_002908_050 0.0608418564 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
8 Hb_001876_010 0.0633739265 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
9 Hb_002213_020 0.0658411991 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
10 Hb_010515_020 0.0659191001 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
11 Hb_003544_050 0.0707408535 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
12 Hb_005582_040 0.0710561997 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
13 Hb_000537_050 0.0712379877 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
14 Hb_029243_030 0.0734195726 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
15 Hb_000614_240 0.0746025989 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
16 Hb_000352_310 0.0757657626 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
17 Hb_000140_210 0.0770880086 - - sec10, putative [Ricinus communis]
18 Hb_001999_310 0.0773160192 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
19 Hb_016347_010 0.0773935564 - - protein transporter, putative [Ricinus communis]
20 Hb_008948_020 0.0775224133 - - hypothetical protein JCGZ_21216 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_170 Hb_000984_170 Hb_004677_050 Hb_004677_050 Hb_000984_170--Hb_004677_050 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_005663_110 Hb_005663_110 Hb_000984_170--Hb_005663_110 Hb_006452_120 Hb_006452_120 Hb_000984_170--Hb_006452_120 Hb_000011_060 Hb_000011_060 Hb_000984_170--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_000984_170--Hb_002908_050 Hb_002213_020 Hb_002213_020 Hb_004677_050--Hb_002213_020 Hb_004677_050--Hb_005663_110 Hb_016347_010 Hb_016347_010 Hb_004677_050--Hb_016347_010 Hb_004208_050 Hb_004208_050 Hb_004677_050--Hb_004208_050 Hb_002749_060 Hb_002749_060 Hb_004677_050--Hb_002749_060 Hb_002830_010 Hb_002830_010 Hb_004030_080--Hb_002830_010 Hb_005582_040 Hb_005582_040 Hb_004030_080--Hb_005582_040 Hb_004030_080--Hb_006452_120 Hb_000028_130 Hb_000028_130 Hb_004030_080--Hb_000028_130 Hb_011016_050 Hb_011016_050 Hb_004030_080--Hb_011016_050 Hb_003544_030 Hb_003544_030 Hb_005663_110--Hb_003544_030 Hb_001434_080 Hb_001434_080 Hb_005663_110--Hb_001434_080 Hb_000327_250 Hb_000327_250 Hb_005663_110--Hb_000327_250 Hb_039946_050 Hb_039946_050 Hb_005663_110--Hb_039946_050 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000614_240 Hb_000614_240 Hb_000011_060--Hb_000614_240 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020 Hb_002908_050--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_002908_050--Hb_000189_550 Hb_002908_050--Hb_000011_060 Hb_000363_040 Hb_000363_040 Hb_002908_050--Hb_000363_040 Hb_004480_100 Hb_004480_100 Hb_002908_050--Hb_004480_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1351 20.6535 11.9712 24.1248 11.7504 16.2181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7893 12.6016 17.2122 27.1468 22.9676

CAGE analysis