Hb_002749_060

Information

Type -
Description -
Location Contig2749: 33344-38347
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39590g
description hypothetical protein
nr
ID XP_012074464.1
description PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
swissprot
ID Q54XK2
description Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1
trembl
ID A0A067LMI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13471 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transport protein sec61 subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28790: 33345-38260 , PASA_asmbl_28791: 36316-36743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002749_060 0.0 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
2 Hb_003280_020 0.0462958906 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
3 Hb_000890_070 0.0484875853 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
4 Hb_011819_020 0.0522806226 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
5 Hb_004048_120 0.0529148089 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
6 Hb_001377_350 0.0533334376 - - PREDICTED: exportin-2 [Jatropha curcas]
7 Hb_065500_020 0.056165669 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
8 Hb_012286_040 0.0566921728 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
9 Hb_002874_110 0.0568860203 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
10 Hb_002890_130 0.0574589242 - - tip120, putative [Ricinus communis]
11 Hb_000317_100 0.0626552247 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
12 Hb_060980_010 0.0629415903 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
13 Hb_000809_230 0.0634198556 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
14 Hb_003544_050 0.0667601248 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
15 Hb_002411_110 0.0667995669 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
16 Hb_000261_480 0.0671409326 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
17 Hb_004677_050 0.0675549175 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
18 Hb_004208_050 0.0680719721 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
19 Hb_000001_170 0.0683012233 - - amino acid transporter, putative [Ricinus communis]
20 Hb_102698_010 0.0693778486 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002749_060 Hb_002749_060 Hb_003280_020 Hb_003280_020 Hb_002749_060--Hb_003280_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_011819_020 Hb_011819_020 Hb_002749_060--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_002749_060--Hb_004048_120 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020 Hb_003280_020--Hb_004048_120 Hb_002025_330 Hb_002025_330 Hb_003280_020--Hb_002025_330 Hb_003280_020--Hb_011819_020 Hb_000261_480 Hb_000261_480 Hb_003280_020--Hb_000261_480 Hb_012330_010 Hb_012330_010 Hb_003280_020--Hb_012330_010 Hb_004450_070 Hb_004450_070 Hb_000890_070--Hb_004450_070 Hb_000890_070--Hb_004048_120 Hb_000890_070--Hb_003280_020 Hb_003340_010 Hb_003340_010 Hb_000890_070--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_000890_070--Hb_002874_110 Hb_002890_130 Hb_002890_130 Hb_011819_020--Hb_002890_130 Hb_011819_020--Hb_000261_480 Hb_000317_100 Hb_000317_100 Hb_011819_020--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_011819_020--Hb_005215_010 Hb_004143_160 Hb_004143_160 Hb_004048_120--Hb_004143_160 Hb_004048_120--Hb_002025_330 Hb_004048_120--Hb_000261_480 Hb_000358_050 Hb_000358_050 Hb_004048_120--Hb_000358_050 Hb_000809_230 Hb_000809_230 Hb_001377_350--Hb_000809_230 Hb_001377_350--Hb_002890_130 Hb_001377_350--Hb_000261_480 Hb_003544_050 Hb_003544_050 Hb_001377_350--Hb_003544_050 Hb_000003_100 Hb_000003_100 Hb_001377_350--Hb_000003_100 Hb_060980_010 Hb_060980_010 Hb_065500_020--Hb_060980_010 Hb_016172_030 Hb_016172_030 Hb_065500_020--Hb_016172_030 Hb_065500_020--Hb_011819_020 Hb_021165_010 Hb_021165_010 Hb_065500_020--Hb_021165_010 Hb_008289_040 Hb_008289_040 Hb_065500_020--Hb_008289_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1376 35.597 30.8162 44.928 22.2256 32.2688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2678 16.8712 25.0167 48.2942 48.1596

CAGE analysis