Hb_000890_070

Information

Type -
Description -
Location Contig890: 82284-94327
Sequence    

Annotation

kegg
ID rcu:RCOM_0680380
description always early, putative
nr
ID XP_012069373.1
description PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
swissprot
ID Q6A332
description Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
trembl
ID A0A067KV21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02000 PE=4 SV=1
Gene Ontology
ID GO:0017053
description protein always early 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61592: 82111-86753 , PASA_asmbl_61593: 84758-85114 , PASA_asmbl_61594: 86769-90275 , PASA_asmbl_61595: 91064-92387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_070 0.0 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
2 Hb_002749_060 0.0484875853 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
3 Hb_004450_070 0.0583407298 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
4 Hb_004048_120 0.059604281 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
5 Hb_003280_020 0.0612921999 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
6 Hb_003340_010 0.0665644263 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
7 Hb_002874_110 0.0677489741 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
8 Hb_001587_030 0.071088658 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
9 Hb_004677_050 0.0717673134 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
10 Hb_000649_060 0.0720477877 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
11 Hb_011485_060 0.0728657278 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
12 Hb_000059_240 0.0734048258 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
13 Hb_004208_050 0.0734550998 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
14 Hb_001511_180 0.0743691949 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
15 Hb_007245_020 0.0752426115 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
16 Hb_002357_070 0.0754513107 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
17 Hb_001377_350 0.0758796729 - - PREDICTED: exportin-2 [Jatropha curcas]
18 Hb_123531_010 0.0764616385 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
19 Hb_012286_040 0.0771306682 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
20 Hb_000358_050 0.0772611502 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]

Gene co-expression network

sample Hb_000890_070 Hb_000890_070 Hb_002749_060 Hb_002749_060 Hb_000890_070--Hb_002749_060 Hb_004450_070 Hb_004450_070 Hb_000890_070--Hb_004450_070 Hb_004048_120 Hb_004048_120 Hb_000890_070--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000890_070--Hb_003280_020 Hb_003340_010 Hb_003340_010 Hb_000890_070--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_000890_070--Hb_002874_110 Hb_002749_060--Hb_003280_020 Hb_011819_020 Hb_011819_020 Hb_002749_060--Hb_011819_020 Hb_002749_060--Hb_004048_120 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020 Hb_019280_010 Hb_019280_010 Hb_004450_070--Hb_019280_010 Hb_000152_700 Hb_000152_700 Hb_004450_070--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_000237_050 Hb_000237_050 Hb_004450_070--Hb_000237_050 Hb_004048_120--Hb_003280_020 Hb_004143_160 Hb_004143_160 Hb_004048_120--Hb_004143_160 Hb_002025_330 Hb_002025_330 Hb_004048_120--Hb_002025_330 Hb_000261_480 Hb_000261_480 Hb_004048_120--Hb_000261_480 Hb_000358_050 Hb_000358_050 Hb_004048_120--Hb_000358_050 Hb_003280_020--Hb_002025_330 Hb_003280_020--Hb_011819_020 Hb_003280_020--Hb_000261_480 Hb_012330_010 Hb_012330_010 Hb_003280_020--Hb_012330_010 Hb_003340_010--Hb_002874_110 Hb_003517_070 Hb_003517_070 Hb_003340_010--Hb_003517_070 Hb_011537_060 Hb_011537_060 Hb_003340_010--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_003340_010--Hb_007933_040 Hb_000649_060 Hb_000649_060 Hb_003340_010--Hb_000649_060 Hb_002874_110--Hb_002749_060 Hb_000803_320 Hb_000803_320 Hb_002874_110--Hb_000803_320 Hb_073171_070 Hb_073171_070 Hb_002874_110--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_002874_110--Hb_006663_060 Hb_002874_110--Hb_011819_020 Hb_009288_020 Hb_009288_020 Hb_002874_110--Hb_009288_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.33598 7.12508 4.89188 8.41739 3.58822 4.94328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24749 2.49683 3.97258 9.87542 9.65801

CAGE analysis