Hb_011537_060

Information

Type -
Description -
Location Contig11537: 60792-67326
Sequence    

Annotation

kegg
ID cit:102607412
description selenoprotein O-like
nr
ID XP_010087379.1
description UPF0061 protein azo1574 [Morus notabilis]
swissprot
ID Q5NYD9
description UPF0061 protein AZOSEA38000 OS=Aromatoleum aromaticum (strain EbN1) GN=AZOSEA38000 PE=3 SV=1
trembl
ID W9QD90
description UPF0061 protein azo1574 OS=Morus notabilis GN=L484_018405 PE=3 SV=1
Gene Ontology
ID GO:0005737
description selenoprotein o

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04652: 60864-65157 , PASA_asmbl_04653: 65938-66720 , PASA_asmbl_04654: 66004-66607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011537_060 0.0 - - UPF0061 protein azo1574 [Morus notabilis]
2 Hb_001975_150 0.0619869139 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
3 Hb_007933_040 0.0688919602 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
4 Hb_004218_180 0.0729148525 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
5 Hb_005489_040 0.074810643 - - PREDICTED: cullin-1 [Jatropha curcas]
6 Hb_003340_010 0.0773424091 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
7 Hb_002874_110 0.0810019604 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
8 Hb_005260_030 0.0825948012 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
9 Hb_000270_170 0.0832342673 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
10 Hb_084670_010 0.083409405 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_002025_330 0.0844956869 - - peptide transporter, putative [Ricinus communis]
12 Hb_000890_070 0.0850504333 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
13 Hb_001269_600 0.0852511083 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_001691_200 0.0859510673 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
15 Hb_000409_050 0.0864092751 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
16 Hb_011485_060 0.0865195412 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
17 Hb_000896_050 0.0873200413 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
18 Hb_003159_050 0.0873656166 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_021576_010 0.0874293868 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
20 Hb_006210_010 0.0875833674 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011537_060 Hb_011537_060 Hb_001975_150 Hb_001975_150 Hb_011537_060--Hb_001975_150 Hb_007933_040 Hb_007933_040 Hb_011537_060--Hb_007933_040 Hb_004218_180 Hb_004218_180 Hb_011537_060--Hb_004218_180 Hb_005489_040 Hb_005489_040 Hb_011537_060--Hb_005489_040 Hb_003340_010 Hb_003340_010 Hb_011537_060--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_011537_060--Hb_002874_110 Hb_000504_180 Hb_000504_180 Hb_001975_150--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_001975_150--Hb_000185_220 Hb_001975_150--Hb_004218_180 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_003517_070 Hb_003517_070 Hb_001975_150--Hb_003517_070 Hb_003159_050 Hb_003159_050 Hb_007933_040--Hb_003159_050 Hb_007741_120 Hb_007741_120 Hb_007933_040--Hb_007741_120 Hb_106890_010 Hb_106890_010 Hb_007933_040--Hb_106890_010 Hb_007933_040--Hb_003340_010 Hb_002686_200 Hb_002686_200 Hb_007933_040--Hb_002686_200 Hb_006100_020 Hb_006100_020 Hb_004218_180--Hb_006100_020 Hb_000270_170 Hb_000270_170 Hb_004218_180--Hb_000270_170 Hb_008948_020 Hb_008948_020 Hb_004218_180--Hb_008948_020 Hb_001141_240 Hb_001141_240 Hb_004218_180--Hb_001141_240 Hb_000409_050 Hb_000409_050 Hb_005489_040--Hb_000409_050 Hb_073171_070 Hb_073171_070 Hb_005489_040--Hb_073171_070 Hb_005260_030 Hb_005260_030 Hb_005489_040--Hb_005260_030 Hb_003117_030 Hb_003117_030 Hb_005489_040--Hb_003117_030 Hb_007413_010 Hb_007413_010 Hb_005489_040--Hb_007413_010 Hb_188281_040 Hb_188281_040 Hb_005489_040--Hb_188281_040 Hb_000890_070 Hb_000890_070 Hb_003340_010--Hb_000890_070 Hb_003340_010--Hb_002874_110 Hb_003340_010--Hb_003517_070 Hb_000649_060 Hb_000649_060 Hb_003340_010--Hb_000649_060 Hb_002749_060 Hb_002749_060 Hb_002874_110--Hb_002749_060 Hb_000803_320 Hb_000803_320 Hb_002874_110--Hb_000803_320 Hb_002874_110--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_002874_110--Hb_006663_060 Hb_011819_020 Hb_011819_020 Hb_002874_110--Hb_011819_020 Hb_009288_020 Hb_009288_020 Hb_002874_110--Hb_009288_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.6556 14.2002 14.5859 20.9336 9.3341 10.1771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.56398 12.4751 10.8537 27.8252 29.7472

CAGE analysis