Hb_003117_030

Information

Type -
Description -
Location Contig3117: 13929-21012
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02810g
description POPTRDRAFT_816029; regulator of chromosome condensation family protein
nr
ID XP_012073847.1
description PREDICTED: protein RCC2 homolog [Jatropha curcas]
swissprot
ID Q9P258
description Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2
trembl
ID A0A067KL27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08247 PE=4 SV=1
Gene Ontology
ID GO:0000278
description protein rcc2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32960: 13984-20913 , PASA_asmbl_32961: 14013-20913 , PASA_asmbl_32963: 19253-19432 , PASA_asmbl_32964: 18418-18881 , PASA_asmbl_32965: 18308-19824
cDNA
(Sanger)
(ID:Location)		 018_F06.ab1: 13984-16145 , 047_I22.ab1: 13984-16309

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003117_030 0.0 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
2 Hb_007413_010 0.0544555437 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
3 Hb_002581_010 0.0622223457 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
4 Hb_005489_040 0.0625880569 - - PREDICTED: cullin-1 [Jatropha curcas]
5 Hb_188281_040 0.0644700464 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
6 Hb_001789_110 0.067253523 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_001925_060 0.0672939653 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
8 Hb_005260_030 0.0689807902 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
9 Hb_122968_010 0.0693033667 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
10 Hb_008387_020 0.0716950465 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
11 Hb_027073_020 0.0718500362 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
12 Hb_008948_020 0.0721527043 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
13 Hb_006913_020 0.0745273153 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
14 Hb_002411_110 0.074761865 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
15 Hb_000749_010 0.0765205545 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
16 Hb_000189_320 0.0780084426 - - PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Jatropha curcas]
17 Hb_028960_020 0.0795477928 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
18 Hb_000599_270 0.0796389027 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
19 Hb_017469_110 0.080783718 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
20 Hb_073171_070 0.0813446443 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003117_030 Hb_003117_030 Hb_007413_010 Hb_007413_010 Hb_003117_030--Hb_007413_010 Hb_002581_010 Hb_002581_010 Hb_003117_030--Hb_002581_010 Hb_005489_040 Hb_005489_040 Hb_003117_030--Hb_005489_040 Hb_188281_040 Hb_188281_040 Hb_003117_030--Hb_188281_040 Hb_001789_110 Hb_001789_110 Hb_003117_030--Hb_001789_110 Hb_001925_060 Hb_001925_060 Hb_003117_030--Hb_001925_060 Hb_006913_020 Hb_006913_020 Hb_007413_010--Hb_006913_020 Hb_008948_020 Hb_008948_020 Hb_007413_010--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_007413_010--Hb_001377_190 Hb_007413_010--Hb_001925_060 Hb_007413_010--Hb_001789_110 Hb_001008_070 Hb_001008_070 Hb_002581_010--Hb_001008_070 Hb_000795_040 Hb_000795_040 Hb_002581_010--Hb_000795_040 Hb_017469_110 Hb_017469_110 Hb_002581_010--Hb_017469_110 Hb_000599_270 Hb_000599_270 Hb_002581_010--Hb_000599_270 Hb_002581_010--Hb_007413_010 Hb_000409_050 Hb_000409_050 Hb_005489_040--Hb_000409_050 Hb_073171_070 Hb_073171_070 Hb_005489_040--Hb_073171_070 Hb_005260_030 Hb_005260_030 Hb_005489_040--Hb_005260_030 Hb_005489_040--Hb_007413_010 Hb_005489_040--Hb_188281_040 Hb_188281_040--Hb_001789_110 Hb_000406_200 Hb_000406_200 Hb_188281_040--Hb_000406_200 Hb_188281_040--Hb_000409_050 Hb_000363_310 Hb_000363_310 Hb_188281_040--Hb_000363_310 Hb_027073_020 Hb_027073_020 Hb_001789_110--Hb_027073_020 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_122968_010 Hb_122968_010 Hb_001789_110--Hb_122968_010 Hb_001789_110--Hb_006913_020 Hb_002411_110 Hb_002411_110 Hb_001925_060--Hb_002411_110 Hb_003040_050 Hb_003040_050 Hb_001925_060--Hb_003040_050 Hb_011174_020 Hb_011174_020 Hb_001925_060--Hb_011174_020 Hb_000317_100 Hb_000317_100 Hb_001925_060--Hb_000317_100 Hb_001925_060--Hb_000795_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.61872 11.183 12.7137 10.4002 6.95489 11.4517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.81298 9.54103 8.08606 17.2546 19.9381

CAGE analysis