Hb_000317_100

Information

Type -
Description -
Location Contig317: 67100-69518
Sequence    

Annotation

kegg
ID rcu:RCOM_1176370
description hypothetical protein
nr
ID XP_012088354.1
description PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25847 PE=4 SV=1
Gene Ontology
ID GO:0009507
description embryo defective 1923

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33353: 67170-69266 , PASA_asmbl_33354: 68346-68498 , PASA_asmbl_33355: 70474-71364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_100 0.0 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
2 Hb_005215_010 0.0271560906 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
3 Hb_002890_130 0.0424299461 - - tip120, putative [Ricinus communis]
4 Hb_011819_020 0.0488061467 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
5 Hb_003040_050 0.0499223671 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
6 Hb_002411_110 0.0563933768 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
7 Hb_000773_040 0.0580389721 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
8 Hb_012518_070 0.0606570196 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
9 Hb_000441_090 0.0610358438 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
10 Hb_001925_060 0.0611713742 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
11 Hb_073171_070 0.0611792276 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
12 Hb_004037_020 0.0624507654 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
13 Hb_002749_060 0.0626552247 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
14 Hb_004586_220 0.0638983176 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
15 Hb_000494_050 0.0644251254 - - cationic amino acid transporter, putative [Ricinus communis]
16 Hb_000003_100 0.0663326434 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
17 Hb_012055_040 0.0670423347 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
18 Hb_012055_110 0.0672026955 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
19 Hb_016172_030 0.0682227877 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
20 Hb_000409_050 0.0688168496 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_100 Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_000317_100--Hb_005215_010 Hb_002890_130 Hb_002890_130 Hb_000317_100--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_000317_100--Hb_011819_020 Hb_003040_050 Hb_003040_050 Hb_000317_100--Hb_003040_050 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_005215_010--Hb_002890_130 Hb_005215_010--Hb_011819_020 Hb_000494_050 Hb_000494_050 Hb_005215_010--Hb_000494_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100 Hb_002890_130--Hb_011819_020 Hb_002890_130--Hb_002411_110 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_011819_020--Hb_000261_480 Hb_002749_060 Hb_002749_060 Hb_011819_020--Hb_002749_060 Hb_003280_020 Hb_003280_020 Hb_011819_020--Hb_003280_020 Hb_009288_020 Hb_009288_020 Hb_003040_050--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_003040_050--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_003040_050--Hb_006663_060 Hb_011174_020 Hb_011174_020 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_002411_110--Hb_001925_060 Hb_008948_020 Hb_008948_020 Hb_002411_110--Hb_008948_020 Hb_002411_110--Hb_011819_020 Hb_033312_040 Hb_033312_040 Hb_002411_110--Hb_033312_040 Hb_000773_040--Hb_073171_070 Hb_000270_190 Hb_000270_190 Hb_000773_040--Hb_000270_190 Hb_000409_050 Hb_000409_050 Hb_000773_040--Hb_000409_050 Hb_000773_040--Hb_002890_130 Hb_000773_040--Hb_003040_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.56722 18.0692 14.246 17.9204 14.4824 14.2438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.51146 9.14301 10.9367 17.7252 21.0909

CAGE analysis