Hb_001141_240

Information

Type -
Description -
Location Contig1141: 167763-172889
Sequence    

Annotation

kegg
ID rcu:RCOM_0911840
description transporter, putative
nr
ID XP_012069656.1
description PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9SKZ5
description Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana GN=At2g32040 PE=1 SV=2
trembl
ID A0A067KZ13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02191 PE=4 SV=1
Gene Ontology
ID GO:0016021
description folate-biopterin transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04249: 168363-172807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_240 0.0 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
2 Hb_006100_020 0.0584803561 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
3 Hb_000815_300 0.0656919492 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_006210_010 0.0670720401 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
5 Hb_000139_080 0.0695123413 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
6 Hb_001811_170 0.0716654843 - - dynamin, putative [Ricinus communis]
7 Hb_006970_020 0.071979539 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
8 Hb_007545_010 0.0746444056 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
9 Hb_048476_080 0.0753405086 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
10 Hb_001008_130 0.0756279189 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
11 Hb_028487_070 0.0760693446 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000960_080 0.0766380071 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
13 Hb_001507_050 0.0767101057 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000406_210 0.0768768916 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
15 Hb_008289_040 0.0769130967 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
16 Hb_004218_180 0.0772788562 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
17 Hb_001159_060 0.0778245727 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
18 Hb_004957_030 0.0782737236 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
19 Hb_007904_300 0.0782885013 - - copine, putative [Ricinus communis]
20 Hb_000270_170 0.0784655917 - - PREDICTED: formin-like protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_240 Hb_001141_240 Hb_006100_020 Hb_006100_020 Hb_001141_240--Hb_006100_020 Hb_000815_300 Hb_000815_300 Hb_001141_240--Hb_000815_300 Hb_006210_010 Hb_006210_010 Hb_001141_240--Hb_006210_010 Hb_000139_080 Hb_000139_080 Hb_001141_240--Hb_000139_080 Hb_001811_170 Hb_001811_170 Hb_001141_240--Hb_001811_170 Hb_006970_020 Hb_006970_020 Hb_001141_240--Hb_006970_020 Hb_002042_050 Hb_002042_050 Hb_006100_020--Hb_002042_050 Hb_033312_130 Hb_033312_130 Hb_006100_020--Hb_033312_130 Hb_048476_080 Hb_048476_080 Hb_006100_020--Hb_048476_080 Hb_001008_130 Hb_001008_130 Hb_006100_020--Hb_001008_130 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_006210_010--Hb_001008_130 Hb_006663_060 Hb_006663_060 Hb_006210_010--Hb_006663_060 Hb_000059_240 Hb_000059_240 Hb_006210_010--Hb_000059_240 Hb_003680_020 Hb_003680_020 Hb_006210_010--Hb_003680_020 Hb_006210_010--Hb_001811_170 Hb_003098_070 Hb_003098_070 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_000139_080--Hb_000078_140 Hb_006189_020 Hb_006189_020 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000139_080--Hb_000169_020 Hb_001226_130 Hb_001226_130 Hb_001811_170--Hb_001226_130 Hb_000342_050 Hb_000342_050 Hb_001811_170--Hb_000342_050 Hb_001587_030 Hb_001587_030 Hb_001811_170--Hb_001587_030 Hb_001085_080 Hb_001085_080 Hb_001811_170--Hb_001085_080 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.99862 8.98171 11.9072 13.0413 4.2195 4.5085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.10534 6.10255 5.02898 10.7281 14.5731

CAGE analysis