Hb_000815_300

Information

Type -
Description -
Location Contig815: 307653-311002
Sequence    

Annotation

kegg
ID rcu:RCOM_0837780
description Transmembrane emp24 domain-containing protein 10 precursor, putative
nr
ID XP_002522481.1
description Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
swissprot
ID Q9LQY3
description Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1
trembl
ID B9S912
description Transmembrane emp24 domain-containing protein 10, putative OS=Ricinus communis GN=RCOM_0837780 PE=3 SV=1
Gene Ontology
ID GO:0016021
description transmembrane emp24 domain-containing protein p24delta9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59373: 307816-310959 , PASA_asmbl_59374: 308435-308685
cDNA
(Sanger)
(ID:Location)		 025_G15.ab1: 307826-310768

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_300 0.0 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
2 Hb_002552_040 0.0501906924 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
3 Hb_006970_020 0.0528012064 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
4 Hb_000406_210 0.0615236989 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
5 Hb_000078_140 0.0653859755 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
6 Hb_001141_240 0.0656919492 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
7 Hb_074197_040 0.0676424344 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
8 Hb_001504_010 0.0683886798 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
9 Hb_001159_060 0.0688144153 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
10 Hb_000862_100 0.0693362611 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
11 Hb_007545_010 0.0695634603 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
12 Hb_000703_190 0.0710517308 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
13 Hb_001301_270 0.0718799173 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
14 Hb_001279_190 0.072600586 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
15 Hb_007483_070 0.0726406641 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
16 Hb_002684_020 0.0730575603 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
17 Hb_000139_080 0.0736487823 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
18 Hb_032202_220 0.0750468248 - - ring finger protein, putative [Ricinus communis]
19 Hb_008289_040 0.0752812612 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
20 Hb_028487_070 0.075343036 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000815_300 Hb_000815_300 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_006970_020 Hb_006970_020 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_002687_180 Hb_002687_180 Hb_002552_040--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_002552_040--Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_002552_040--Hb_006970_020 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020 Hb_005846_050 Hb_005846_050 Hb_000406_210--Hb_005846_050 Hb_001159_060 Hb_001159_060 Hb_000406_210--Hb_001159_060 Hb_008289_040 Hb_008289_040 Hb_000406_210--Hb_008289_040 Hb_000103_290 Hb_000103_290 Hb_000406_210--Hb_000103_290 Hb_000406_210--Hb_002552_040 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_006100_020 Hb_006100_020 Hb_001141_240--Hb_006100_020 Hb_006210_010 Hb_006210_010 Hb_001141_240--Hb_006210_010 Hb_001141_240--Hb_000139_080 Hb_001811_170 Hb_001811_170 Hb_001141_240--Hb_001811_170 Hb_001141_240--Hb_006970_020 Hb_074197_040--Hb_011377_040 Hb_001301_270 Hb_001301_270 Hb_074197_040--Hb_001301_270 Hb_074197_040--Hb_065968_010 Hb_074197_040--Hb_006970_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.28305 11.697 22.5011 23.3555 8.91737 8.45679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.05436 8.71559 8.98828 14.15 21.1692

CAGE analysis