Hb_000059_240

Information

Type -
Description -
Location Contig59: 252307-256654
Sequence    

Annotation

kegg
ID rcu:RCOM_1502940
description Protein FRIGIDA, putative
nr
ID XP_012090538.1
description PREDICTED: protein FRIGIDA [Jatropha curcas]
swissprot
ID P0DH90
description Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=1 SV=1
trembl
ID A0A067JI55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26334 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50176: 252410-256674 , PASA_asmbl_50177: 254872-255087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_240 0.0 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
2 Hb_000960_080 0.0612391525 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
3 Hb_003680_020 0.0629049897 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_000318_150 0.0630233239 - - RNA-binding protein Nova-1, putative [Ricinus communis]
5 Hb_006210_010 0.0653953252 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
6 Hb_033312_130 0.0689443417 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
7 Hb_007904_300 0.0692613158 - - copine, putative [Ricinus communis]
8 Hb_000270_170 0.0705719833 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
9 Hb_000890_070 0.0734048258 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
10 Hb_002357_070 0.0755233365 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
11 Hb_002631_210 0.0790860083 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
12 Hb_005181_050 0.0797059678 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
13 Hb_011485_060 0.079989915 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
14 Hb_005074_020 0.0807907505 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
15 Hb_001008_130 0.0813069005 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
16 Hb_001691_200 0.0815909307 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
17 Hb_073171_070 0.0824818033 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
18 Hb_002609_080 0.08318385 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
19 Hb_001488_020 0.0835008411 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
20 Hb_006100_020 0.0835152848 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]

Gene co-expression network

sample Hb_000059_240 Hb_000059_240 Hb_000960_080 Hb_000960_080 Hb_000059_240--Hb_000960_080 Hb_003680_020 Hb_003680_020 Hb_000059_240--Hb_003680_020 Hb_000318_150 Hb_000318_150 Hb_000059_240--Hb_000318_150 Hb_006210_010 Hb_006210_010 Hb_000059_240--Hb_006210_010 Hb_033312_130 Hb_033312_130 Hb_000059_240--Hb_033312_130 Hb_007904_300 Hb_007904_300 Hb_000059_240--Hb_007904_300 Hb_001507_050 Hb_001507_050 Hb_000960_080--Hb_001507_050 Hb_000960_080--Hb_003680_020 Hb_000960_080--Hb_000318_150 Hb_000270_170 Hb_000270_170 Hb_000960_080--Hb_000270_170 Hb_000960_080--Hb_033312_130 Hb_000844_050 Hb_000844_050 Hb_003680_020--Hb_000844_050 Hb_003680_020--Hb_001507_050 Hb_003661_010 Hb_003661_010 Hb_003680_020--Hb_003661_010 Hb_048476_080 Hb_048476_080 Hb_003680_020--Hb_048476_080 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000787_200 Hb_000787_200 Hb_000318_150--Hb_000787_200 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190 Hb_001008_130 Hb_001008_130 Hb_006210_010--Hb_001008_130 Hb_006663_060 Hb_006663_060 Hb_006210_010--Hb_006663_060 Hb_006210_010--Hb_003680_020 Hb_001141_240 Hb_001141_240 Hb_006210_010--Hb_001141_240 Hb_001811_170 Hb_001811_170 Hb_006210_010--Hb_001811_170 Hb_003929_210 Hb_003929_210 Hb_033312_130--Hb_003929_210 Hb_033312_130--Hb_001008_130 Hb_006100_020 Hb_006100_020 Hb_033312_130--Hb_006100_020 Hb_000035_100 Hb_000035_100 Hb_033312_130--Hb_000035_100 Hb_033312_130--Hb_002357_070 Hb_006824_010 Hb_006824_010 Hb_007904_300--Hb_006824_010 Hb_008948_020 Hb_008948_020 Hb_007904_300--Hb_008948_020 Hb_000535_050 Hb_000535_050 Hb_007904_300--Hb_000535_050 Hb_000139_080 Hb_000139_080 Hb_007904_300--Hb_000139_080 Hb_000684_500 Hb_000684_500 Hb_007904_300--Hb_000684_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92569 8.73891 6.68239 7.71539 2.94421 3.78615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57924 3.06425 4.43356 9.45984 10.2181

CAGE analysis