Hb_006824_010

Information

Type -
Description -
Location Contig6824: 52731-58738
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12520g
description POPTRDRAFT_873928; origin recognition complex subunit 4 family protein
nr
ID XP_012093076.1
description PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
swissprot
ID Q6EWX1
description Origin of replication complex subunit 4 OS=Arabidopsis thaliana GN=ORC4 PE=1 SV=1
trembl
ID A0A067LIK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16288 PE=4 SV=1
Gene Ontology
ID GO:0000808
description origin recognition complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53871: 52607-57813 , PASA_asmbl_53872: 55679-58751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006824_010 0.0 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
2 Hb_002006_150 0.0586914749 - - copine, putative [Ricinus communis]
3 Hb_007904_300 0.0626030879 - - copine, putative [Ricinus communis]
4 Hb_000139_080 0.0685884912 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
5 Hb_006189_020 0.068964019 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_003098_070 0.0711940126 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
7 Hb_001269_130 0.0749033702 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
8 Hb_189216_010 0.0749924699 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
9 Hb_159809_070 0.0751035136 - - phospholipase A-2-activating protein, putative [Ricinus communis]
10 Hb_000078_140 0.0761370662 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
11 Hb_002686_200 0.0803780016 - - glucosidase II beta subunit, putative [Ricinus communis]
12 Hb_001817_170 0.0807961269 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
13 Hb_065968_010 0.0818120359 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
14 Hb_012733_040 0.0819101777 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
15 Hb_004333_040 0.0822097075 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
16 Hb_008304_020 0.0828613074 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
17 Hb_000101_390 0.0828645674 - - PREDICTED: mucin-5B [Jatropha curcas]
18 Hb_001141_240 0.0829699456 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
19 Hb_001828_180 0.0844698195 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
20 Hb_003430_050 0.084603358 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]

Gene co-expression network

sample Hb_006824_010 Hb_006824_010 Hb_002006_150 Hb_002006_150 Hb_006824_010--Hb_002006_150 Hb_007904_300 Hb_007904_300 Hb_006824_010--Hb_007904_300 Hb_000139_080 Hb_000139_080 Hb_006824_010--Hb_000139_080 Hb_006189_020 Hb_006189_020 Hb_006824_010--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_006824_010--Hb_003098_070 Hb_001269_130 Hb_001269_130 Hb_006824_010--Hb_001269_130 Hb_002006_150--Hb_000139_080 Hb_000078_140 Hb_000078_140 Hb_002006_150--Hb_000078_140 Hb_015099_030 Hb_015099_030 Hb_002006_150--Hb_015099_030 Hb_002675_250 Hb_002675_250 Hb_002006_150--Hb_002675_250 Hb_000101_390 Hb_000101_390 Hb_002006_150--Hb_000101_390 Hb_008948_020 Hb_008948_020 Hb_007904_300--Hb_008948_020 Hb_000059_240 Hb_000059_240 Hb_007904_300--Hb_000059_240 Hb_000535_050 Hb_000535_050 Hb_007904_300--Hb_000535_050 Hb_007904_300--Hb_000139_080 Hb_000684_500 Hb_000684_500 Hb_007904_300--Hb_000684_500 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_000139_080--Hb_000078_140 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_006189_020--Hb_033312_040 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_004333_040 Hb_004333_040 Hb_006189_020--Hb_004333_040 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_006189_020--Hb_000510_360 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_003098_070--Hb_006189_020 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_003098_070--Hb_000078_140 Hb_000663_060 Hb_000663_060 Hb_001269_130--Hb_000663_060 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_000364_050 Hb_000364_050 Hb_001269_130--Hb_000364_050 Hb_001269_130--Hb_003098_070 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47848 1.89321 3.08985 3.03718 0.916898 1.32002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74277 1.51661 1.8048 3.14545 2.9285

CAGE analysis