Hb_002675_250

Information

Type -
Description -
Location Contig2675: 226114-232860
Sequence    

Annotation

kegg
ID rcu:RCOM_0895620
description aspartate aminotransferase, putative (EC:2.6.1.1)
nr
ID XP_002517536.1
description aspartate aminotransferase, putative [Ricinus communis]
swissprot
ID O67781
description Aspartate aminotransferase OS=Aquifex aeolicus (strain VF5) GN=aspC PE=3 SV=1
trembl
ID B9RUW7
description Aspartate aminotransferase, putative OS=Ricinus communis GN=RCOM_0895620 PE=3 SV=1
Gene Ontology
ID GO:0003824
description pyridoxal phosphate -dependent transferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27871: 226170-232884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_250 0.0 - - aspartate aminotransferase, putative [Ricinus communis]
2 Hb_000529_180 0.0694543388 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
3 Hb_010863_050 0.0701447799 - - OTU domain-containing protein 6B, putative [Ricinus communis]
4 Hb_002684_020 0.0802861171 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
5 Hb_002006_150 0.0803919366 - - copine, putative [Ricinus communis]
6 Hb_004324_360 0.0814157619 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
7 Hb_001488_020 0.08718544 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
8 Hb_012438_030 0.087484706 - - PREDICTED: protein sym-1 [Jatropha curcas]
9 Hb_000167_110 0.0888175449 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
10 Hb_012150_030 0.0893336602 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_000304_070 0.0960015563 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
12 Hb_168893_030 0.0961099967 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
13 Hb_000788_030 0.0964224134 - - PREDICTED: dynamin-2A [Jatropha curcas]
14 Hb_001438_010 0.0979767629 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
15 Hb_087313_010 0.0983764414 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000046_540 0.0987285464 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
17 Hb_000340_040 0.0987478794 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
18 Hb_000016_210 0.09896961 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
19 Hb_003363_070 0.0991864313 - - -
20 Hb_005601_020 0.0994422133 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002675_250 Hb_002675_250 Hb_000529_180 Hb_000529_180 Hb_002675_250--Hb_000529_180 Hb_010863_050 Hb_010863_050 Hb_002675_250--Hb_010863_050 Hb_002684_020 Hb_002684_020 Hb_002675_250--Hb_002684_020 Hb_002006_150 Hb_002006_150 Hb_002675_250--Hb_002006_150 Hb_004324_360 Hb_004324_360 Hb_002675_250--Hb_004324_360 Hb_001488_020 Hb_001488_020 Hb_002675_250--Hb_001488_020 Hb_000529_180--Hb_010863_050 Hb_008705_020 Hb_008705_020 Hb_000529_180--Hb_008705_020 Hb_000167_110 Hb_000167_110 Hb_000529_180--Hb_000167_110 Hb_001438_010 Hb_001438_010 Hb_000529_180--Hb_001438_010 Hb_000046_540 Hb_000046_540 Hb_000529_180--Hb_000046_540 Hb_012150_030 Hb_012150_030 Hb_010863_050--Hb_012150_030 Hb_004452_120 Hb_004452_120 Hb_010863_050--Hb_004452_120 Hb_000304_070 Hb_000304_070 Hb_010863_050--Hb_000304_070 Hb_000212_230 Hb_000212_230 Hb_010863_050--Hb_000212_230 Hb_035273_020 Hb_035273_020 Hb_010863_050--Hb_035273_020 Hb_002684_020--Hb_004324_360 Hb_006970_020 Hb_006970_020 Hb_002684_020--Hb_006970_020 Hb_021596_020 Hb_021596_020 Hb_002684_020--Hb_021596_020 Hb_000788_030 Hb_000788_030 Hb_002684_020--Hb_000788_030 Hb_000815_300 Hb_000815_300 Hb_002684_020--Hb_000815_300 Hb_012438_030 Hb_012438_030 Hb_002684_020--Hb_012438_030 Hb_006824_010 Hb_006824_010 Hb_002006_150--Hb_006824_010 Hb_000139_080 Hb_000139_080 Hb_002006_150--Hb_000139_080 Hb_000078_140 Hb_000078_140 Hb_002006_150--Hb_000078_140 Hb_015099_030 Hb_015099_030 Hb_002006_150--Hb_015099_030 Hb_000101_390 Hb_000101_390 Hb_002006_150--Hb_000101_390 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_004324_360--Hb_000788_030 Hb_004324_360--Hb_001488_020 Hb_000476_060 Hb_000476_060 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040 Hb_000270_170 Hb_000270_170 Hb_001488_020--Hb_000270_170 Hb_001817_170 Hb_001817_170 Hb_001488_020--Hb_001817_170 Hb_006100_020 Hb_006100_020 Hb_001488_020--Hb_006100_020 Hb_003758_010 Hb_003758_010 Hb_001488_020--Hb_003758_010 Hb_073171_070 Hb_073171_070 Hb_001488_020--Hb_073171_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4668 29.5802 60.7694 32.3854 15.6962 18.0998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.2424 17.6356 27.9242 32.7037 61.2608

CAGE analysis