Hb_001438_010

Information

Type -
Description -
Location Contig1438: 43597-56885
Sequence    

Annotation

kegg
ID tcc:TCM_043269
description Pseudouridine synthase family protein isoform 1
nr
ID XP_012078447.1
description PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
swissprot
ID P35159
description Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 168) GN=rluB PE=1 SV=2
trembl
ID A0A067KL99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13134 PE=4 SV=1
Gene Ontology
ID GO:0003723
description pseudouridine synthase family protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11561: 46714-47160 , PASA_asmbl_11562: 43638-56908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001438_010 0.0 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
2 Hb_007741_110 0.0744014372 - - -
3 Hb_003053_110 0.077238986 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
4 Hb_001195_770 0.078528016 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
5 Hb_006907_060 0.0803970865 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
6 Hb_000941_100 0.0813446621 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
7 Hb_000529_180 0.0823283893 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
8 Hb_114310_070 0.0844960311 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
9 Hb_004109_260 0.086074083 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
10 Hb_012150_030 0.0867482767 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_002150_140 0.0883372011 - - PREDICTED: girdin-like [Jatropha curcas]
12 Hb_000580_150 0.0896352833 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
13 Hb_011861_050 0.0912530939 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
14 Hb_033312_010 0.0922030446 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000613_120 0.0930041429 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
16 Hb_000311_120 0.0934324485 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
17 Hb_009775_010 0.093952196 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
18 Hb_000480_040 0.0954008572 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
19 Hb_000802_130 0.0959724184 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
20 Hb_005946_040 0.0963688284 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001438_010 Hb_001438_010 Hb_007741_110 Hb_007741_110 Hb_001438_010--Hb_007741_110 Hb_003053_110 Hb_003053_110 Hb_001438_010--Hb_003053_110 Hb_001195_770 Hb_001195_770 Hb_001438_010--Hb_001195_770 Hb_006907_060 Hb_006907_060 Hb_001438_010--Hb_006907_060 Hb_000941_100 Hb_000941_100 Hb_001438_010--Hb_000941_100 Hb_000529_180 Hb_000529_180 Hb_001438_010--Hb_000529_180 Hb_007741_110--Hb_003053_110 Hb_007741_110--Hb_006907_060 Hb_000107_430 Hb_000107_430 Hb_007741_110--Hb_000107_430 Hb_012150_030 Hb_012150_030 Hb_007741_110--Hb_012150_030 Hb_002631_240 Hb_002631_240 Hb_007741_110--Hb_002631_240 Hb_003053_110--Hb_012150_030 Hb_003053_110--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_003053_110--Hb_001195_770 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_001195_770--Hb_008705_020 Hb_001195_770--Hb_000941_100 Hb_000816_200 Hb_000816_200 Hb_001195_770--Hb_000816_200 Hb_001195_770--Hb_006907_060 Hb_002762_110 Hb_002762_110 Hb_001195_770--Hb_002762_110 Hb_006907_060--Hb_002631_240 Hb_006907_060--Hb_000941_100 Hb_006907_060--Hb_003053_110 Hb_073973_090 Hb_073973_090 Hb_006907_060--Hb_073973_090 Hb_006907_060--Hb_008705_020 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_000941_100--Hb_012150_030 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_002675_250 Hb_002675_250 Hb_000529_180--Hb_002675_250 Hb_010863_050 Hb_010863_050 Hb_000529_180--Hb_010863_050 Hb_000529_180--Hb_008705_020 Hb_000167_110 Hb_000167_110 Hb_000529_180--Hb_000167_110 Hb_000046_540 Hb_000046_540 Hb_000529_180--Hb_000046_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.59202 5.49341 18.0596 7.74968 4.91849 5.00152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.66137 7.73064 6.62665 7.68127 21.605

CAGE analysis