Hb_000529_180

Information

Type -
Description -
Location Contig529: 251647-267139
Sequence    

Annotation

kegg
ID rcu:RCOM_1054840
description hypothetical protein
nr
ID XP_012081663.1
description PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
swissprot
ID Q56X46
description Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1
trembl
ID A0A067KD71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18699 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47244: 251659-266099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_180 0.0 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
2 Hb_002675_250 0.0694543388 - - aspartate aminotransferase, putative [Ricinus communis]
3 Hb_010863_050 0.0719822048 - - OTU domain-containing protein 6B, putative [Ricinus communis]
4 Hb_008705_020 0.0789137188 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
5 Hb_000167_110 0.0794961981 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
6 Hb_001438_010 0.0823283893 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
7 Hb_000046_540 0.0826234917 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
8 Hb_001195_770 0.087097647 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
9 Hb_002025_250 0.0874932531 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
10 Hb_012150_030 0.0878831079 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_000340_150 0.0899860736 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
12 Hb_003053_110 0.0900900665 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
13 Hb_005511_140 0.0907312821 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
14 Hb_006907_060 0.091558532 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
15 Hb_002078_340 0.0945651916 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
16 Hb_000941_100 0.0984032721 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
17 Hb_001014_070 0.0988895734 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
18 Hb_004109_260 0.0989931507 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
19 Hb_002631_240 0.0996266172 - - JHL17M24.3 [Jatropha curcas]
20 Hb_022378_010 0.1006592206 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000529_180 Hb_000529_180 Hb_002675_250 Hb_002675_250 Hb_000529_180--Hb_002675_250 Hb_010863_050 Hb_010863_050 Hb_000529_180--Hb_010863_050 Hb_008705_020 Hb_008705_020 Hb_000529_180--Hb_008705_020 Hb_000167_110 Hb_000167_110 Hb_000529_180--Hb_000167_110 Hb_001438_010 Hb_001438_010 Hb_000529_180--Hb_001438_010 Hb_000046_540 Hb_000046_540 Hb_000529_180--Hb_000046_540 Hb_002675_250--Hb_010863_050 Hb_002684_020 Hb_002684_020 Hb_002675_250--Hb_002684_020 Hb_002006_150 Hb_002006_150 Hb_002675_250--Hb_002006_150 Hb_004324_360 Hb_004324_360 Hb_002675_250--Hb_004324_360 Hb_001488_020 Hb_001488_020 Hb_002675_250--Hb_001488_020 Hb_012150_030 Hb_012150_030 Hb_010863_050--Hb_012150_030 Hb_004452_120 Hb_004452_120 Hb_010863_050--Hb_004452_120 Hb_000304_070 Hb_000304_070 Hb_010863_050--Hb_000304_070 Hb_000212_230 Hb_000212_230 Hb_010863_050--Hb_000212_230 Hb_035273_020 Hb_035273_020 Hb_010863_050--Hb_035273_020 Hb_001195_770 Hb_001195_770 Hb_008705_020--Hb_001195_770 Hb_003053_110 Hb_003053_110 Hb_008705_020--Hb_003053_110 Hb_030736_040 Hb_030736_040 Hb_008705_020--Hb_030736_040 Hb_008705_020--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_008705_020--Hb_006907_060 Hb_000941_100 Hb_000941_100 Hb_008705_020--Hb_000941_100 Hb_011671_260 Hb_011671_260 Hb_000167_110--Hb_011671_260 Hb_000107_430 Hb_000107_430 Hb_000167_110--Hb_000107_430 Hb_000167_110--Hb_003053_110 Hb_003411_090 Hb_003411_090 Hb_000167_110--Hb_003411_090 Hb_003266_030 Hb_003266_030 Hb_000167_110--Hb_003266_030 Hb_007741_110 Hb_007741_110 Hb_001438_010--Hb_007741_110 Hb_001438_010--Hb_003053_110 Hb_001438_010--Hb_001195_770 Hb_001438_010--Hb_006907_060 Hb_001438_010--Hb_000941_100 Hb_002078_340 Hb_002078_340 Hb_000046_540--Hb_002078_340 Hb_002025_250 Hb_002025_250 Hb_000046_540--Hb_002025_250 Hb_000078_140 Hb_000078_140 Hb_000046_540--Hb_000078_140 Hb_001195_400 Hb_001195_400 Hb_000046_540--Hb_001195_400 Hb_002769_030 Hb_002769_030 Hb_000046_540--Hb_002769_030 Hb_000300_470 Hb_000300_470 Hb_000046_540--Hb_000300_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9859 16.927 34.4796 17.5742 13.9465 9.07802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6708 14.3313 19.0841 18.1575 45.4794

CAGE analysis