Hb_002025_250

Information

Type -
Description -
Location Contig2025: 186801-196945
Sequence    

Annotation

kegg
ID rcu:RCOM_0775750
description 1-phosphatidylinositol-4-phosphate 5-kinase, putative
nr
ID XP_012072417.1
description PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
swissprot
ID Q6F6B5
description Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 OS=Arabidopsis thaliana GN=ARC3 PE=1 SV=2
trembl
ID B9S7B0
description 1-phosphatidylinositol-4-phosphate 5-kinase, putative OS=Ricinus communis GN=RCOM_0775750 PE=4 SV=1
Gene Ontology
ID GO:0043234
description protein accumulation and replication of chloroplasts 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20588: 186875-197057 , PASA_asmbl_20589: 192643-195104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_250 0.0 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
2 Hb_000046_540 0.0672631223 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
3 Hb_008705_020 0.0771683358 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
4 Hb_000853_440 0.0847728782 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
5 Hb_002078_340 0.0854140858 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
6 Hb_000529_180 0.0874932531 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
7 Hb_000167_110 0.0876436911 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
8 Hb_007741_110 0.0877800225 - - -
9 Hb_003053_110 0.0879963499 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
10 Hb_001195_770 0.0895263619 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
11 Hb_010863_050 0.0910688536 - - OTU domain-containing protein 6B, putative [Ricinus communis]
12 Hb_004109_260 0.0911589459 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
13 Hb_000078_140 0.091261818 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
14 Hb_000212_440 0.0925906135 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000260_460 0.0926246527 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
16 Hb_006907_060 0.0940528742 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
17 Hb_000300_470 0.0964828652 - - PREDICTED: nucleolin-like [Jatropha curcas]
18 Hb_001014_070 0.0972843959 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
19 Hb_001824_080 0.0975881239 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
20 Hb_074197_040 0.0984030307 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]

Gene co-expression network

sample Hb_002025_250 Hb_002025_250 Hb_000046_540 Hb_000046_540 Hb_002025_250--Hb_000046_540 Hb_008705_020 Hb_008705_020 Hb_002025_250--Hb_008705_020 Hb_000853_440 Hb_000853_440 Hb_002025_250--Hb_000853_440 Hb_002078_340 Hb_002078_340 Hb_002025_250--Hb_002078_340 Hb_000529_180 Hb_000529_180 Hb_002025_250--Hb_000529_180 Hb_000167_110 Hb_000167_110 Hb_002025_250--Hb_000167_110 Hb_000046_540--Hb_002078_340 Hb_000078_140 Hb_000078_140 Hb_000046_540--Hb_000078_140 Hb_001195_400 Hb_001195_400 Hb_000046_540--Hb_001195_400 Hb_002769_030 Hb_002769_030 Hb_000046_540--Hb_002769_030 Hb_000300_470 Hb_000300_470 Hb_000046_540--Hb_000300_470 Hb_001195_770 Hb_001195_770 Hb_008705_020--Hb_001195_770 Hb_003053_110 Hb_003053_110 Hb_008705_020--Hb_003053_110 Hb_030736_040 Hb_030736_040 Hb_008705_020--Hb_030736_040 Hb_008705_020--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_008705_020--Hb_006907_060 Hb_000941_100 Hb_000941_100 Hb_008705_020--Hb_000941_100 Hb_000101_080 Hb_000101_080 Hb_000853_440--Hb_000101_080 Hb_000853_440--Hb_000078_140 Hb_011377_040 Hb_011377_040 Hb_000853_440--Hb_011377_040 Hb_003159_050 Hb_003159_050 Hb_000853_440--Hb_003159_050 Hb_074197_040 Hb_074197_040 Hb_000853_440--Hb_074197_040 Hb_000482_040 Hb_000482_040 Hb_002078_340--Hb_000482_040 Hb_012150_030 Hb_012150_030 Hb_002078_340--Hb_012150_030 Hb_003153_010 Hb_003153_010 Hb_002078_340--Hb_003153_010 Hb_003376_230 Hb_003376_230 Hb_002078_340--Hb_003376_230 Hb_000364_050 Hb_000364_050 Hb_002078_340--Hb_000364_050 Hb_002675_250 Hb_002675_250 Hb_000529_180--Hb_002675_250 Hb_010863_050 Hb_010863_050 Hb_000529_180--Hb_010863_050 Hb_000529_180--Hb_008705_020 Hb_000529_180--Hb_000167_110 Hb_001438_010 Hb_001438_010 Hb_000529_180--Hb_001438_010 Hb_000529_180--Hb_000046_540 Hb_011671_260 Hb_011671_260 Hb_000167_110--Hb_011671_260 Hb_000107_430 Hb_000107_430 Hb_000167_110--Hb_000107_430 Hb_000167_110--Hb_003053_110 Hb_003411_090 Hb_003411_090 Hb_000167_110--Hb_003411_090 Hb_003266_030 Hb_003266_030 Hb_000167_110--Hb_003266_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.82859 4.28466 13.4612 9.44539 7.33871 5.04928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.19 6.76491 8.36826 8.29625 17.746

CAGE analysis