Hb_003376_230

Information

Type -
Description -
Location Contig3376: 161067-165211
Sequence    

Annotation

kegg
ID rcu:RCOM_1356650
description Chaperone protein dnaJ, putative
nr
ID XP_012082338.1
description PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
swissprot
ID Q9LYW9
description DnaJ protein P58IPK homolog OS=Arabidopsis thaliana GN=P58IPK PE=1 SV=1
trembl
ID A0A067JYX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16491 PE=4 SV=1
Gene Ontology
ID GO:0005788
description dnaj homolog subfamily c member 3 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35347: 161262-162152 , PASA_asmbl_35348: 162165-165110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_230 0.0 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
2 Hb_000212_440 0.0566183134 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_011512_110 0.0664428326 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_003153_010 0.0700028831 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
5 Hb_000172_580 0.0727155246 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_001584_200 0.0747029567 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
7 Hb_005405_020 0.0778968416 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
8 Hb_002078_340 0.082639262 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
9 Hb_000224_160 0.0852858625 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_000479_250 0.0856305038 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
11 Hb_036790_080 0.0872548178 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
12 Hb_035273_020 0.0915002034 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
13 Hb_005253_030 0.0918543735 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000556_090 0.0942084694 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
15 Hb_041290_020 0.0947849977 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
16 Hb_000613_110 0.0953003263 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
17 Hb_004108_160 0.0962804705 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
18 Hb_000462_090 0.0979409826 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
19 Hb_007192_070 0.098472509 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
20 Hb_004846_220 0.0985709593 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_230 Hb_003376_230 Hb_000212_440 Hb_000212_440 Hb_003376_230--Hb_000212_440 Hb_011512_110 Hb_011512_110 Hb_003376_230--Hb_011512_110 Hb_003153_010 Hb_003153_010 Hb_003376_230--Hb_003153_010 Hb_000172_580 Hb_000172_580 Hb_003376_230--Hb_000172_580 Hb_001584_200 Hb_001584_200 Hb_003376_230--Hb_001584_200 Hb_005405_020 Hb_005405_020 Hb_003376_230--Hb_005405_020 Hb_035273_020 Hb_035273_020 Hb_000212_440--Hb_035273_020 Hb_000212_440--Hb_005405_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_005539_010 Hb_005539_010 Hb_000212_440--Hb_005539_010 Hb_004452_120 Hb_004452_120 Hb_000212_440--Hb_004452_120 Hb_002333_060 Hb_002333_060 Hb_011512_110--Hb_002333_060 Hb_011512_110--Hb_000212_440 Hb_003747_230 Hb_003747_230 Hb_011512_110--Hb_003747_230 Hb_011512_110--Hb_001584_200 Hb_000462_090 Hb_000462_090 Hb_011512_110--Hb_000462_090 Hb_004108_160 Hb_004108_160 Hb_003153_010--Hb_004108_160 Hb_000556_090 Hb_000556_090 Hb_003153_010--Hb_000556_090 Hb_002769_030 Hb_002769_030 Hb_003153_010--Hb_002769_030 Hb_008421_020 Hb_008421_020 Hb_003153_010--Hb_008421_020 Hb_000184_170 Hb_000184_170 Hb_003153_010--Hb_000184_170 Hb_007192_070 Hb_007192_070 Hb_000172_580--Hb_007192_070 Hb_000172_580--Hb_001584_200 Hb_005800_030 Hb_005800_030 Hb_000172_580--Hb_005800_030 Hb_002496_020 Hb_002496_020 Hb_000172_580--Hb_002496_020 Hb_002014_030 Hb_002014_030 Hb_000172_580--Hb_002014_030 Hb_000224_160 Hb_000224_160 Hb_001584_200--Hb_000224_160 Hb_001584_200--Hb_000462_090 Hb_012022_150 Hb_012022_150 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_009225_020 Hb_009225_020 Hb_005405_020--Hb_009225_020 Hb_005405_020--Hb_003153_010 Hb_000797_040 Hb_000797_040 Hb_005405_020--Hb_000797_040 Hb_005405_020--Hb_000224_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.70889 4.71799 14.8715 11.4483 12.3905 10.8752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9971 12.7876 12.303 12.3617 26.0675

CAGE analysis