Hb_011512_110

Information

Type -
Description -
Location Contig11512: 53312-59496
Sequence    

Annotation

kegg
ID rcu:RCOM_1023260
description Transmembrane protein TPARL, putative
nr
ID XP_012092666.1
description PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9T0H9
description GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=At4g13590 PE=1 SV=2
trembl
ID A0A067J9B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06428 PE=4 SV=1
Gene Ontology
ID GO:0016021
description gdt1-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04571: 53150-53598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011512_110 0.0 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_003376_230 0.0664428326 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
3 Hb_002333_060 0.0818337794 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000212_440 0.087517101 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_003747_230 0.0993345334 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
6 Hb_001584_200 0.0998071635 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
7 Hb_000462_090 0.1020577785 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
8 Hb_003038_200 0.1025776068 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
9 Hb_005539_010 0.1040527884 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
10 Hb_000227_170 0.104785438 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_000172_580 0.1095459062 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002811_160 0.1101010379 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
13 Hb_012022_150 0.1112557213 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
14 Hb_000190_030 0.111786514 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
15 Hb_004330_090 0.1127631733 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
16 Hb_000224_160 0.113197406 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_000221_140 0.1146140722 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_001824_090 0.1171686959 - - -
19 Hb_107879_010 0.1181699651 - - phosphoglycerate mutase, putative [Ricinus communis]
20 Hb_035273_020 0.1182540548 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011512_110 Hb_011512_110 Hb_003376_230 Hb_003376_230 Hb_011512_110--Hb_003376_230 Hb_002333_060 Hb_002333_060 Hb_011512_110--Hb_002333_060 Hb_000212_440 Hb_000212_440 Hb_011512_110--Hb_000212_440 Hb_003747_230 Hb_003747_230 Hb_011512_110--Hb_003747_230 Hb_001584_200 Hb_001584_200 Hb_011512_110--Hb_001584_200 Hb_000462_090 Hb_000462_090 Hb_011512_110--Hb_000462_090 Hb_003376_230--Hb_000212_440 Hb_003153_010 Hb_003153_010 Hb_003376_230--Hb_003153_010 Hb_000172_580 Hb_000172_580 Hb_003376_230--Hb_000172_580 Hb_003376_230--Hb_001584_200 Hb_005405_020 Hb_005405_020 Hb_003376_230--Hb_005405_020 Hb_002811_160 Hb_002811_160 Hb_002333_060--Hb_002811_160 Hb_022693_140 Hb_022693_140 Hb_002333_060--Hb_022693_140 Hb_012022_150 Hb_012022_150 Hb_002333_060--Hb_012022_150 Hb_071188_010 Hb_071188_010 Hb_002333_060--Hb_071188_010 Hb_003038_200 Hb_003038_200 Hb_002333_060--Hb_003038_200 Hb_035273_020 Hb_035273_020 Hb_000212_440--Hb_035273_020 Hb_000212_440--Hb_005405_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_005539_010 Hb_005539_010 Hb_000212_440--Hb_005539_010 Hb_004452_120 Hb_004452_120 Hb_000212_440--Hb_004452_120 Hb_002759_190 Hb_002759_190 Hb_003747_230--Hb_002759_190 Hb_000317_260 Hb_000317_260 Hb_003747_230--Hb_000317_260 Hb_001587_180 Hb_001587_180 Hb_003747_230--Hb_001587_180 Hb_003747_230--Hb_005539_010 Hb_004440_060 Hb_004440_060 Hb_003747_230--Hb_004440_060 Hb_000227_170 Hb_000227_170 Hb_003747_230--Hb_000227_170 Hb_000224_160 Hb_000224_160 Hb_001584_200--Hb_000224_160 Hb_001584_200--Hb_000462_090 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_001584_200--Hb_000172_580 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000340_150 Hb_000340_150 Hb_000462_090--Hb_000340_150 Hb_000462_090--Hb_000172_580 Hb_009775_010 Hb_009775_010 Hb_000462_090--Hb_009775_010 Hb_000462_090--Hb_003376_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.63429 2.99954 14.4387 6.32066 11.5447 6.83541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.89712 11.0446 8.68124 9.70006 20.606

CAGE analysis