Hb_000212_440

Information

Type -
Description -
Location Contig212: 449355-453441
Sequence    

Annotation

kegg
ID rcu:RCOM_1078390
description riboflavin-specific deaminase, putative (EC:3.5.4.26 1.1.1.193)
nr
ID XP_012085768.1
description PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9STY4
description Riboflavin biosynthesis protein PYRR, chloroplastic OS=Arabidopsis thaliana GN=PYRR PE=1 SV=1
trembl
ID A0A067K3P0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18033 PE=4 SV=1
Gene Ontology
ID GO:0008270
description riboflavin biosynthesis protein chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21989: 449569-451817 , PASA_asmbl_21991: 452353-453205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_440 0.0 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_003376_230 0.0566183134 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
3 Hb_035273_020 0.0660885843 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
4 Hb_005405_020 0.0670649788 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
5 Hb_000061_180 0.0719648967 - - exonuclease, putative [Ricinus communis]
6 Hb_005539_010 0.0726139355 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
7 Hb_004452_120 0.0753823005 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
8 Hb_012150_030 0.0763986163 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_000221_140 0.0798990372 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
10 Hb_010863_050 0.0806321491 - - OTU domain-containing protein 6B, putative [Ricinus communis]
11 Hb_002774_190 0.0815019931 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
12 Hb_003153_010 0.0818740148 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
13 Hb_000207_300 0.0833429005 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
14 Hb_000212_230 0.0834586165 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
15 Hb_041290_020 0.0839355778 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
16 Hb_000375_390 0.0851704499 - - poly-A binding protein, putative [Ricinus communis]
17 Hb_011512_110 0.087517101 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_005127_030 0.0885569469 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_021374_030 0.0892355156 - - hypothetical protein RCOM_0351490 [Ricinus communis]
20 Hb_000227_170 0.0905441448 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000212_440 Hb_000212_440 Hb_003376_230 Hb_003376_230 Hb_000212_440--Hb_003376_230 Hb_035273_020 Hb_035273_020 Hb_000212_440--Hb_035273_020 Hb_005405_020 Hb_005405_020 Hb_000212_440--Hb_005405_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_005539_010 Hb_005539_010 Hb_000212_440--Hb_005539_010 Hb_004452_120 Hb_004452_120 Hb_000212_440--Hb_004452_120 Hb_011512_110 Hb_011512_110 Hb_003376_230--Hb_011512_110 Hb_003153_010 Hb_003153_010 Hb_003376_230--Hb_003153_010 Hb_000172_580 Hb_000172_580 Hb_003376_230--Hb_000172_580 Hb_001584_200 Hb_001584_200 Hb_003376_230--Hb_001584_200 Hb_003376_230--Hb_005405_020 Hb_035273_020--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_035273_020--Hb_010863_050 Hb_001195_400 Hb_001195_400 Hb_035273_020--Hb_001195_400 Hb_004846_220 Hb_004846_220 Hb_035273_020--Hb_004846_220 Hb_041290_020 Hb_041290_020 Hb_035273_020--Hb_041290_020 Hb_009225_020 Hb_009225_020 Hb_005405_020--Hb_009225_020 Hb_005405_020--Hb_003153_010 Hb_000797_040 Hb_000797_040 Hb_005405_020--Hb_000797_040 Hb_000224_160 Hb_000224_160 Hb_005405_020--Hb_000224_160 Hb_000375_390 Hb_000375_390 Hb_000061_180--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_000061_180--Hb_000023_260 Hb_007975_060 Hb_007975_060 Hb_000061_180--Hb_007975_060 Hb_000061_180--Hb_004452_120 Hb_133702_010 Hb_133702_010 Hb_000061_180--Hb_133702_010 Hb_002157_120 Hb_002157_120 Hb_000061_180--Hb_002157_120 Hb_006538_120 Hb_006538_120 Hb_005539_010--Hb_006538_120 Hb_000941_100 Hb_000941_100 Hb_005539_010--Hb_000941_100 Hb_001935_100 Hb_001935_100 Hb_005539_010--Hb_001935_100 Hb_000227_170 Hb_000227_170 Hb_005539_010--Hb_000227_170 Hb_012150_030 Hb_012150_030 Hb_005539_010--Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_004452_120--Hb_010863_050 Hb_004452_120--Hb_133702_010 Hb_000364_050 Hb_000364_050 Hb_004452_120--Hb_000364_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.30725 2.96496 8.55467 6.17077 5.61642 5.32533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.80063 5.36163 4.38056 5.64109 11.7753

CAGE analysis